RNA id: TCONS_00043275


Basic Information

Item Value
RNA id TCONS_00043275
length 2625
RNA type mRNA
GC content 0.51
exon number 25
gene id XLOC_021825
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33777519 ~ 33901337 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agcaatattttaatttgagagagagagaaagcgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagatgtccaACTTTACACCATCCTATTAAAGGGCTCTGTCAGTGGGCTGTGCAACTTGCAGCACCAACTCAAAACAAGGCTTTCAACTGCTGGAACTGCATTAGGAGCTATCCGTGCTGAATTTGGGTCCTGAATCCTGCCAACATGATTGCCACCACACAGCAGAACATGACTACGGAGCTGcaGGATCTTGGTAGCTCAGGAGGACCTCCTCGAAATTGGAAGGGAATCGGTATCGCCATGGTGGTCATCCTGGGGGTCATGTCTCTTGTGACTCTTTCCATTTTTCTCCTCACACCCGATGAGTCCCATCTCCTACGGTTGTCTCGTCTCACTCTGGAGAACCTGGAGAGCGAGGATTTCCAAATTCACAACCCCTGTGCCACATGGCTAAGTGagCATGAAGTGTCACTGTGCACCCAGGAAGGTCATGTTTTAATTCACAATCTCAGCACCAATCTCACAACCACGCTATTGGACAACAGCACCCTGgATCTAAAGTCAATGAAGTTCCAGGTTTCTGCTGACAAGAGGTTCATCTTGATGGCGTATAATATCCAGCATGTATTCTCACAGTCCTTCACAGCATCCTTTGCAATCTACATAGTGTCCAGCGGggatATTGTGGACCTCACTCCGTCAGAGGAGGATACATCTGTGCTTCAGTATGCAGCGTGGGGACCTCAAGGGAACCAGCTGGTCTATGTGTTTGAGAATGACATCTACTACAAACCCGATGTGTCCAGCAAGGCGATGCGTCTGACAGCCTCGGGCAGGAAGGGAATGGTGGTTAATGGGCTTTCTGATTGGACATACGAAGAGGAGATATTGCTGAAATATCCTGCGTTCTGGTGGGCCAAAGATGGCGCGCGCCTGGCATATCTGTCCATCAATAACTCAGCAACTCCTTTTATGGAAATACATCACTTCCTGGGTGGGAGCTACCCTTCTAATGTCCTCTACCCATATCCAAAGGCGGGATCCAGAATCCCATCAGCCAGTCTGTTTGTGGTGAATTTATACGGTCCAGCGCACACATTAGAGATGTTTCCTCCAGACTCCCAGAACAGCAGGGACAGCTACATCTCTATGGTGAGCTGGATCAGCAGCACCCGCCTGACAGTGCGCTGGTTGAACCGTGTCCAGAATCAGTCGGTTCTGTGCGTATGCGAGGCCACGACTGGAGCCTGTTCAGAGAGACACCAAATGGCGATGGACTTCTGGCACAACAACCAGCGGCAGGAGGAGCCGCTGTTCACGGCAGATGGTTCCCTGTTTTACCTCATCCTGCCTGCCAAGCAAGGGGCCCGTGGGGAGTTTCTCCACATCGCCAGCCTCCCCGCTCAGGCTTCCTCTCCTTCAGTTTCTCCTCGCTTTCTAACATCAGGGAACTGGGATGTAATCTCACTGTGCGCCCTTGATGAGGAGAACGATAAAATCTATTTTCTGAGCGCGGAGGAGTCGCAGCAGAGCAGACACTTATACAGCGTGGAGCTTGGGGGAGTATTTCATCGGCAGTGTCTGACGTGTAACCTGTTTGAGCGCTGCAGCTTCTTCAGAGCAGACTTCAGCCCCAATCAGACATACTTCACTCTCTATTGCTTGGGCCCTGGTGTCCCAAAGGTGACCATTCACAGCACGAGTGACCCTTTCAGATACACTGTGGTGGAAGACAACAGCGTCCTCGCCATGTCTCTCGAAACCAAGCAGCTCCCTGAGACCCTTTACCACACACTTTCCTCCGACAACAGCGACCTAGATGTGAAGATGTCCCTGCCCCCTGGATATGAAGGAAACCTGCATCCTCTCCTCATTATCATTGACAGTATTCCAGGCAGGCCGTCAGTAACGGAGGAGTTTGCCCTGGGCTGGCCGGAGGTTTTGTCCAGTATGCATGGAGTGGCTCTTGCTTGGATCGATAGCAGAAGCAGAATCTCACAGACACAAAAAAGCAGCACGCTAGACCCTCGCAAGCTGGGTTCACTCCGCATTAAAGACAAGCTCGGAGTCGTGGAGTGGTTAATGAAGCTGCCGTACATCGACGCCAAAAGAATTGCAGTGTATGGAAAGGGATTCGGTGGCTATTTAGGTTTGAAGATGCTGACGGGAACCGATCAGATGTTCAGATGCGCTGCTGTTATGGCTCCCATCACAGACTTCAAGCTCTATAGTGCAGCCTTTTCTGAGCGATTTCTAGGCCTTCCAGCTAAAGAGGAGCATTCATACATGACTGCATCTTTGTTGGACGACATCCACAAGCTCAAAGACGAAAACTTCCTCCTCATACACGGGACCGCAGATGCGCGAGTGCATTTCCAACACAGCGCTGAGCTGTTGAGTCGTCTGGTGAAGGTAGAGGCCAACTACACCCTTCAGCTCTACCCAGACGAAGGCCACACTCTGAGGGAAGAGCGGAGCCAGCAGCACCTGCACCGCACCATCCTCCACTACCTTCACAACTGCCTCAAATACGACCCCTTCCTCAACatagaggaggaagaggaggacgaGGAGGAGGAAGAGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159642

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044857 lncRNA upstream 318254 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00044856 lncRNA upstream 1198085 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044677 lncRNA upstream 1214705 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044855 lncRNA upstream 1289793 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00043257 lncRNA upstream 1367592 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00043283 lncRNA downstream 77374 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043285 lncRNA downstream 86118 33987455 ~ 33991280 (+) False XLOC_021832
TCONS_00043291 lncRNA downstream 138057 34039394 ~ 34043302 (+) True XLOC_021834
TCONS_00044859 lncRNA downstream 146079 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00044858 lncRNA downstream 146079 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00043273 mRNA upstream 19777 33752275 ~ 33757742 (+) True XLOC_021823
TCONS_00043272 mRNA upstream 47967 33718602 ~ 33729552 (+) True XLOC_021822
TCONS_00043269 mRNA upstream 333464 33383583 ~ 33444055 (+) False XLOC_021819
TCONS_00043270 mRNA upstream 333464 33413804 ~ 33444055 (+) True XLOC_021819
TCONS_00043267 mRNA upstream 467897 33296588 ~ 33309622 (+) True XLOC_021818
TCONS_00043277 mRNA downstream 6562 33907899 ~ 33928316 (+) True XLOC_021827
TCONS_00043278 mRNA downstream 32891 33934228 ~ 33951831 (+) False XLOC_021828
TCONS_00043279 mRNA downstream 46537 33947874 ~ 33953106 (+) True XLOC_021828
TCONS_00043280 mRNA downstream 56013 33957350 ~ 33961989 (+) True XLOC_021829
TCONS_00043281 mRNA downstream 62282 33963619 ~ 33975156 (+) False XLOC_021830
TCONS_00043274 other upstream 16854 33759747 ~ 33760665 (+) True XLOC_021824
TCONS_00043271 other upstream 239350 33538051 ~ 33538169 (+) True XLOC_021821
TCONS_00043268 other upstream 356679 33381154 ~ 33420840 (+) False XLOC_021819
TCONS_00043266 other upstream 467934 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043265 other upstream 487158 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043288 other downstream 101420 34002757 ~ 34002873 (+) True XLOC_021833
TCONS_00043293 other downstream 146079 34047416 ~ 34053709 (+) False XLOC_021835
TCONS_00043296 other downstream 146226 34047563 ~ 34185009 (+) False XLOC_021835
TCONS_00043297 other downstream 152169 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043302 other downstream 1501360 35402697 ~ 35461009 (+) False XLOC_021842

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_03534862_03537560.mRNA True 1042 mRNA 0.47 5 CI01000001 3534307 ~ 3537560 (-)