RNA id: TCONS_00043268


Basic Information

Item Value
RNA id TCONS_00043268
length 538
RNA type processed_transcript
GC content 0.43
exon number 3
gene id XLOC_021819
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33381154 ~ 33444055 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTATTCAGTCACTTTTGAGGTTTCATTTCAGGATTTTaagaaatgaaaatgtactgtaACTAAATCTTAGAACAGAACATGCGCTATAAGTAACTTACAAGAATGAAAATAAACAGCAAGGTAAAAACAATCCCATTGGAAAACATTCACAAAATCCATCCACCCAGTTTACTGGGAGTCATGAGATCTCACAAATCATAAGCATGAGATGGGAAACGGCATGATGTAACAGAGAAAAGCAGACTGAATCAAACATTACTGACTTCCTCTCTTTCTTTACTGTTGTCTCCTCAGAGTCTCCAGCAGTCATGTGTTCGGCAGACACACTCCTCCGCTCCACTCTGCGCTCGTCCCTTTTTTCTGTTTGTCTCTGTCAGTTTTTATCAGATCGAATCCTGAAGGCTGCACGGGTAGTTTACAGCACTCTGATGGAGGGTAACCCAGGCCTGGATTTAACTGCAGGACGTCGAGGCAAACACCGTCCGTCTGGAGGAGCATGGTAAAGTCGTTCTGGTTCTTGAGAAGAGCTCGGCGCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04072 Phospholipase D signaling pathway
ko04024 cAMP signaling pathway
ko04670 Leukocyte transendothelial migration
ko04261 Adrenergic signaling in cardiomyocytes
ko04726 Serotonergic synapse
ko04720 Long-term potentiation

ZFIN:

id description
ZDB-GENE-090312-38 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Is expressed in neuromast. Orthologous to human RAPGEF3 (Rap guanine nucleotide exchange factor 3).

Ensembl:

ensembl_id ENSDART00000139280

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044856 lncRNA upstream 801720 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044677 lncRNA upstream 818340 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044855 lncRNA upstream 893428 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00043257 lncRNA upstream 971227 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00043252 lncRNA upstream 983310 32392520 ~ 32397844 (+) False XLOC_021809
TCONS_00044857 lncRNA downstream 34723 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00043283 lncRNA downstream 557871 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043285 lncRNA downstream 566615 33987455 ~ 33991280 (+) False XLOC_021832
TCONS_00043291 lncRNA downstream 618554 34039394 ~ 34043302 (+) True XLOC_021834
TCONS_00044859 lncRNA downstream 626576 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00043267 mRNA upstream 71532 33296588 ~ 33309622 (+) True XLOC_021818
TCONS_00043263 mRNA upstream 848542 32499916 ~ 32532612 (+) True XLOC_021813
TCONS_00043262 mRNA upstream 946221 32426954 ~ 32434933 (+) True XLOC_021811
TCONS_00043261 mRNA upstream 951036 32426954 ~ 32430118 (+) False XLOC_021811
TCONS_00043256 mRNA upstream 971226 32406009 ~ 32409928 (+) False XLOC_021810
TCONS_00043272 mRNA downstream 297762 33718602 ~ 33729552 (+) True XLOC_021822
TCONS_00043273 mRNA downstream 331435 33752275 ~ 33757742 (+) True XLOC_021823
TCONS_00043275 mRNA downstream 356679 33777519 ~ 33901337 (+) True XLOC_021825
TCONS_00043277 mRNA downstream 487059 33907899 ~ 33928316 (+) True XLOC_021827
TCONS_00043278 mRNA downstream 513388 33934228 ~ 33951831 (+) False XLOC_021828
TCONS_00043266 other upstream 71569 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043265 other upstream 90793 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043264 other upstream 262030 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043260 other upstream 959404 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043259 other upstream 971227 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043271 other downstream 117211 33538051 ~ 33538169 (+) True XLOC_021821
TCONS_00043274 other downstream 338907 33759747 ~ 33760665 (+) True XLOC_021824
TCONS_00043276 other downstream 407825 33828665 ~ 33830190 (+) True XLOC_021826
TCONS_00043288 other downstream 581917 34002757 ~ 34002873 (+) True XLOC_021833
TCONS_00043293 other downstream 626576 34047416 ~ 34053709 (+) False XLOC_021835

Expression Profile

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