RNA id: TCONS_00043259


Basic Information

Item Value
RNA id TCONS_00043259
length 725
RNA type processed_transcript
GC content 0.38
exon number 5
gene id XLOC_021810
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32406009 ~ 32409928 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggtgcaCAAAAGCGTTCATGGAGCGTCACATGATtaaagttgaaccactgaagtcacatggaatgtttttggttcctttttctGGACTAATATCTCAGGACCattggaggatgagggagctctcaaattCCATCTAAAATATTTCTGTACCAAAGATTAATGTGTAACGGAATTAAAAGCTGTTCAGTTCCTGCAGTGAACTCGGTTTTCTCTGATCCTTGTTTGGGAACTTATAAATTCCTGGATATTACTTATGACTGCATCCCATCAAAAAGAAGTGTAACCTGTGAAAATACCCAAAGTGTAATAGTTTGTGGTTCTGGTGTTATTTTGGTTCATTATGCCAACTATGGACGCCGTGATCTCTCCACCTGCCCTCATAAATTGGCAAAGACACCACACTGCTACTCTCCTCAGACCAGCAGCCTGCGCTCCAGATGCAATGGGAGGAAGACTTGTTCTCTGAGCGCTTCAAATTCTCTTTACTCTGATCCATGTCCAGGTGTCAACAAGTATCTGGAAGTGACATACAGCTGTGTATAACTTTGCAATTATCATGTCACACAAAAGTAGTTAACATGTTTTGTGTATACTTTAATATGAATTGTTCCAAATAGATTTTTATAGTTGATACTCTTGGTTTAAGAAATTGATTAAATGTGTATCTAGTCATGCTGTTCTCTGTGTTTTGTGTAGTTCTGTAATAAACAACTTTTATTTTCAa

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-122 Predicted to enable carbohydrate binding activity.

Ensembl:

ensembl_id ENSDART00000154822

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043252 lncRNA upstream 9351 32392520 ~ 32397844 (+) False XLOC_021809
TCONS_00044853 lncRNA upstream 154118 32250356 ~ 32253077 (+) True XLOC_021807
TCONS_00044852 lncRNA upstream 193835 32210258 ~ 32213360 (+) True XLOC_021806
TCONS_00043249 lncRNA upstream 205701 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00043238 lncRNA upstream 368976 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00044855 lncRNA downstream 70403 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00044677 lncRNA downstream 152683 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044856 lncRNA downstream 167123 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044857 lncRNA downstream 1045636 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00043283 lncRNA downstream 1568784 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043251 mRNA upstream 6201 32392461 ~ 32400994 (+) False XLOC_021809
TCONS_00043250 mRNA upstream 55016 32335871 ~ 32352179 (+) True XLOC_021808
TCONS_00043248 mRNA upstream 299587 32101361 ~ 32107608 (+) True XLOC_021804
TCONS_00043246 mRNA upstream 299736 32101202 ~ 32107459 (+) False XLOC_021804
TCONS_00043245 mRNA upstream 321256 32066168 ~ 32085939 (+) True XLOC_021803
TCONS_00043261 mRNA downstream 17027 32426954 ~ 32430118 (+) False XLOC_021811
TCONS_00043262 mRNA downstream 17027 32426954 ~ 32434933 (+) True XLOC_021811
TCONS_00043263 mRNA downstream 89989 32499916 ~ 32532612 (+) True XLOC_021813
TCONS_00043267 mRNA downstream 886661 33296588 ~ 33309622 (+) True XLOC_021818
TCONS_00043269 mRNA downstream 973656 33383583 ~ 33444055 (+) False XLOC_021819
TCONS_00043247 other upstream 299714 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043240 other upstream 368976 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043229 other upstream 466321 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043223 other upstream 739652 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043220 other upstream 973532 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043260 other downstream 2607 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043264 other downstream 709083 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043265 other downstream 880346 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043266 other downstream 884706 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043268 other downstream 971227 33381154 ~ 33420840 (+) False XLOC_021819

Expression Profile

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