RNA id: TCONS_00043248


Basic Information

Item Value
RNA id TCONS_00043248
length 1275
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_021804
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32101202 ~ 32107608 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGCGTATTGCTACTTTGAAAGTCGTGAGTTTTATAACATAAAGTCAAGCAAACATCGTTTTAATAAACTTCAACCGTCAGTTTTTGCGCTCGGCCTGCTGACTCTCACGTTGTTTGACCGTCACGTGCTGCATTTCTTCAGAGTGCTGTGTGGTTTAACGTTATACTagaaaatgttttgattttaatGTTTGGCGGACTTTATTTAGggtgaagatttttttaaacccacGGAAAGGTACACGGGGGTCCAGGAAACGGAAGTATGGCCACTTATAGGTTTGGCAGTAGCGTCGGTCCGTCTGGAGTCCACTCTGAAAGTACAGGGCAGATGTGGAATGAAGACAACGGTTATGGTGAAGAAACGGAAGATGCCAGCGACCCTAATAGGATTGTGCAGTGCCCATATGACAAAAACCACCAGATCAGAGCCTCACGCTTCCCTTTTCATGTTCTCAAGTGCAGAAAGAACCACCCCAAACTGGCCAGTGAACTGAAGACCTGCCCCTTTAATGCCAGACACTTGATTCCCAAGCATGAGATGTCTCATCACATAGCAAACTGCGAAGACAAGAGGTGTTTGAACGCTGAAGATGGAAATGTAGAAGTATTGGAGAAGTTCCAGGTTCCTGTTAACACCTGGACGAACCCTGCACCCAATGAGGACTGGGAAACAGAGACTGATGATAATGCTGCTATGTTTGTCTGGGGTGAATCAACCAATCCGCTTCCGCAGAACAAGCCAGAGCCGGATACCACCATCAGTTTATCCGATGGACTGCGGGCACCACGGACTCTTCCATGGAAACTCTGATACGGCGCCGCTGGATGGACGTCTGGATAttcttacttttttaaaaatactttaagcCCTGTGTGATTTCTATCCTAGATTTGTCTAAAGCCTGCTtatcttttaaagtttttaattttgaaGTGTTGAGATTTTGAAGTATTTCCCCTTTAATATTTTCTGAAGGTCAATATGCTCTGGCTATGGTCAGTGTGTAGACAATCTATAAACCAAAGAATTATTGCGTCTTCCATAGAGAAATCCATCAGTGTCGATCTTTCAGTGACCTTTAATCCTACACGTGTTTCATTAAAAGTTTCTTTAAACCTAAATGTTGCATCTCTTCAATCATGCAGTAAAGTAACAAGGAAATGGTGTCTGATATTTGTCATCACTTGCATGCATATTTGATAATTTTGTTAATGTTATAGAGGTTTTTTTCTCAAGTATACTAACTATAGTGTATTAGGTTACACTCATT

Function

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2099 Predicted to enable metal ion binding activity. Predicted to act upstream of or within spermatogenesis. Is expressed in several structures, including digestive system; hypaxial myotome region; immature eye; pectoral fin; and yolk syncytial layer. Orthologous to several human genes including GTSF1 (gametocyte specific factor 1).

Ensembl:

ensembl_id ENSDART00000138849

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043238 lncRNA upstream 63142 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA upstream 63142 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043242 lncRNA upstream 63301 32037087 ~ 32038060 (+) False XLOC_021802
TCONS_00044851 lncRNA upstream 215448 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043214 lncRNA upstream 852416 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043249 lncRNA downstream 86800 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00044852 lncRNA downstream 102650 32210258 ~ 32213360 (+) True XLOC_021806
TCONS_00044853 lncRNA downstream 142748 32250356 ~ 32253077 (+) True XLOC_021807
TCONS_00044854 lncRNA downstream 284885 32392493 ~ 32418824 (+) False XLOC_021809
TCONS_00043252 lncRNA downstream 284912 32392520 ~ 32397844 (+) False XLOC_021809
TCONS_00043245 mRNA upstream 15422 32066168 ~ 32085939 (+) True XLOC_021803
TCONS_00043244 mRNA upstream 40476 32044410 ~ 32060885 (+) True XLOC_021802
TCONS_00043243 mRNA upstream 40478 32039386 ~ 32060883 (+) False XLOC_021802
TCONS_00043239 mRNA upstream 61571 32029304 ~ 32039790 (+) False XLOC_021802
TCONS_00043237 mRNA upstream 63140 32028607 ~ 32038221 (+) False XLOC_021802
TCONS_00043250 mRNA downstream 228263 32335871 ~ 32352179 (+) True XLOC_021808
TCONS_00043251 mRNA downstream 284853 32392461 ~ 32400994 (+) False XLOC_021809
TCONS_00043253 mRNA downstream 284934 32392542 ~ 32421886 (+) False XLOC_021809
TCONS_00043255 mRNA downstream 285004 32392612 ~ 32423348 (+) False XLOC_021809
TCONS_00043254 mRNA downstream 285004 32392612 ~ 32423348 (+) False XLOC_021809
TCONS_00043240 other upstream 63142 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043229 other upstream 160487 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043223 other upstream 433818 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043220 other upstream 667698 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043219 other upstream 668013 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043259 other downstream 299587 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043260 other downstream 304926 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043264 other downstream 1011402 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043265 other downstream 1182665 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043266 other downstream 1187025 33294633 ~ 33309585 (+) False XLOC_021818

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU23110 True 977 TUCP 0.46 8 CI01000001 13341989 ~ 13348146 (-)
tiger barb (Puntius tetrazona) TU23110 True 437 lncRNA 0.28 2 NC_056701.1 520750 ~ 522672 (+)