RNA id: TCONS_00043249


Basic Information

Item Value
RNA id TCONS_00043249
length 893
lncRNA type antisense
GC content 0.46
exon number 2
gene id XLOC_021805
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32194408 ~ 32201494 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATAAAGCACggccaaatatatttatatattatggcACCCAAAGAGCATAATCGTGATTCCAATCTCTTGTCCGCACGATATCGGCATTCAGCATATTTCCTGTTTGTTTTGGTACAgAGGTCTGTTGAGTCCGGGGATGTACTTGAGCAGCCTCCGCCTGAAGCTCTTCTGTTTTGGTTTGCGCTGCAGGCTGCTGAAGCCTCCGCACTGCTGTTTTTCTCCGTTTGGCACTGctgatgatgatgctgatgatgatgatgatggaggcCTCAAGTAGCTGCGTGTGCTGGCACTGcgggtcaggctggttttagcagtGGTGAAGAGCTCGCTGGCGGGTCGAATGAGACGTGGGCGAGTGTTCTCCTGTTTAGCATGGATCTGGTCATTGCTGGTGTTGTTGAAGATGCAGGTCTGGTAGAGCGGGTCGTCTTCAGCCGTGGCGGCGCTCAGATGGCTGACGCTGCTGCTGGTGCTGTCGGTGCCCCGTAACGCTCGCAACGCTGCAGGACTCGGAGCTCCCAGACTCCCATAAACACCAGCTGATTCCAGAGACTCGTACATCGCCACATCACTCATCACGATACCTGTGAGAGGGGAAACAGagttatatatatgcacacacatacactatacagttgaagtctgaattattagcccccttagaatttcccaaatgatgtttaacagatttagcacatttttacagcgtgtctgataatattttttcttctggagaaagtctgatttgtttagttttggctagaataaaagcagttttaaattttttaaagaacattttaaggtcaaaatgattatcccctttaagctatattttgtttcaatagtcaacagaacaaccCATcggtatacaatgacttgcctaatgac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159098

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043238 lncRNA upstream 156189 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA upstream 156189 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043242 lncRNA upstream 156348 32037087 ~ 32038060 (+) False XLOC_021802
TCONS_00044851 lncRNA upstream 308495 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043214 lncRNA upstream 945463 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00044852 lncRNA downstream 8764 32210258 ~ 32213360 (+) True XLOC_021806
TCONS_00044853 lncRNA downstream 48862 32250356 ~ 32253077 (+) True XLOC_021807
TCONS_00044854 lncRNA downstream 190999 32392493 ~ 32418824 (+) False XLOC_021809
TCONS_00043252 lncRNA downstream 191026 32392520 ~ 32397844 (+) False XLOC_021809
TCONS_00043257 lncRNA downstream 204862 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00043248 mRNA upstream 86800 32101361 ~ 32107608 (+) True XLOC_021804
TCONS_00043246 mRNA upstream 86949 32101202 ~ 32107459 (+) False XLOC_021804
TCONS_00043245 mRNA upstream 108469 32066168 ~ 32085939 (+) True XLOC_021803
TCONS_00043244 mRNA upstream 133523 32044410 ~ 32060885 (+) True XLOC_021802
TCONS_00043243 mRNA upstream 133525 32039386 ~ 32060883 (+) False XLOC_021802
TCONS_00043250 mRNA downstream 134377 32335871 ~ 32352179 (+) True XLOC_021808
TCONS_00043251 mRNA downstream 190967 32392461 ~ 32400994 (+) False XLOC_021809
TCONS_00043253 mRNA downstream 191048 32392542 ~ 32421886 (+) False XLOC_021809
TCONS_00043255 mRNA downstream 191118 32392612 ~ 32423348 (+) False XLOC_021809
TCONS_00043254 mRNA downstream 191118 32392612 ~ 32423348 (+) False XLOC_021809
TCONS_00043247 other upstream 86927 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043240 other upstream 156189 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043229 other upstream 253534 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043223 other upstream 526865 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043220 other upstream 760745 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043259 other downstream 205701 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043260 other downstream 211040 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043264 other downstream 917516 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043265 other downstream 1088779 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043266 other downstream 1093139 33294633 ~ 33309585 (+) False XLOC_021818

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU174714 True 1161 lncRNA 0.35 5 NC_053123.1 37930943 ~ 38355465 (+)
mexican tetra (Astyanax mexicanus) TU174714 False 1879 lncRNA 0.47 6 NC_035911.1 3382960 ~ 3394301 (-)