Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043246 |
| length | 1033 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 8 |
| gene id | XLOC_021804 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 32101202 ~ 32107608 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007283 | spermatogenesis | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040426-2099 | Predicted to enable metal ion binding activity. Predicted to act upstream of or within spermatogenesis. Is expressed in several structures, including digestive system; hypaxial myotome region; immature eye; pectoral fin; and yolk syncytial layer. Orthologous to several human genes including GTSF1 (gametocyte specific factor 1). |
| ensembl_id | ENSDART00000000992 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043238 | lncRNA | upstream | 62983 | 32028625 ~ 32038219 (+) | False | XLOC_021802 |
| TCONS_00043241 | lncRNA | upstream | 62983 | 32034741 ~ 32038219 (+) | False | XLOC_021802 |
| TCONS_00043242 | lncRNA | upstream | 63142 | 32037087 ~ 32038060 (+) | False | XLOC_021802 |
| TCONS_00044851 | lncRNA | upstream | 215289 | 31863739 ~ 31885913 (+) | True | XLOC_021795 |
| TCONS_00043214 | lncRNA | upstream | 852257 | 31245431 ~ 31248945 (+) | False | XLOC_021787 |
| TCONS_00043249 | lncRNA | downstream | 86949 | 32194408 ~ 32201494 (+) | True | XLOC_021805 |
| TCONS_00044852 | lncRNA | downstream | 102799 | 32210258 ~ 32213360 (+) | True | XLOC_021806 |
| TCONS_00044853 | lncRNA | downstream | 142897 | 32250356 ~ 32253077 (+) | True | XLOC_021807 |
| TCONS_00044854 | lncRNA | downstream | 285034 | 32392493 ~ 32418824 (+) | False | XLOC_021809 |
| TCONS_00043252 | lncRNA | downstream | 285061 | 32392520 ~ 32397844 (+) | False | XLOC_021809 |
| TCONS_00043245 | mRNA | upstream | 15263 | 32066168 ~ 32085939 (+) | True | XLOC_021803 |
| TCONS_00043244 | mRNA | upstream | 40317 | 32044410 ~ 32060885 (+) | True | XLOC_021802 |
| TCONS_00043243 | mRNA | upstream | 40319 | 32039386 ~ 32060883 (+) | False | XLOC_021802 |
| TCONS_00043239 | mRNA | upstream | 61412 | 32029304 ~ 32039790 (+) | False | XLOC_021802 |
| TCONS_00043236 | mRNA | upstream | 62981 | 32028597 ~ 32038221 (+) | False | XLOC_021802 |
| TCONS_00043250 | mRNA | downstream | 228412 | 32335871 ~ 32352179 (+) | True | XLOC_021808 |
| TCONS_00043251 | mRNA | downstream | 285002 | 32392461 ~ 32400994 (+) | False | XLOC_021809 |
| TCONS_00043253 | mRNA | downstream | 285083 | 32392542 ~ 32421886 (+) | False | XLOC_021809 |
| TCONS_00043255 | mRNA | downstream | 285153 | 32392612 ~ 32423348 (+) | False | XLOC_021809 |
| TCONS_00043254 | mRNA | downstream | 285153 | 32392612 ~ 32423348 (+) | False | XLOC_021809 |
| TCONS_00043240 | other | upstream | 62983 | 32032765 ~ 32038219 (+) | False | XLOC_021802 |
| TCONS_00043229 | other | upstream | 160328 | 31933675 ~ 31940874 (+) | True | XLOC_021797 |
| TCONS_00043223 | other | upstream | 433659 | 31667429 ~ 31667543 (+) | True | XLOC_021793 |
| TCONS_00043220 | other | upstream | 667539 | 31433579 ~ 31433663 (+) | True | XLOC_021791 |
| TCONS_00043219 | other | upstream | 667854 | 31433273 ~ 31433348 (+) | True | XLOC_021790 |
| TCONS_00043259 | other | downstream | 299736 | 32407195 ~ 32409927 (+) | True | XLOC_021810 |
| TCONS_00043260 | other | downstream | 305075 | 32412534 ~ 32421750 (+) | True | XLOC_021809 |
| TCONS_00043264 | other | downstream | 1011551 | 33119010 ~ 33119124 (+) | True | XLOC_021816 |
| TCONS_00043265 | other | downstream | 1182814 | 33290273 ~ 33290361 (+) | True | XLOC_021817 |
| TCONS_00043266 | other | downstream | 1187174 | 33294633 ~ 33309585 (+) | False | XLOC_021818 |
