RNA id: TCONS_00043277


Basic Information

Item Value
RNA id TCONS_00043277
length 3110
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_021827
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33907899 ~ 33928316 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCCTTTTTCAACCTTCACTGCGAGCACGGTAGCGAGAGGGGCACCTTCAAGCAGGGGTCGATAAATAACCACTTGTAaaatttatacacatatacaagaACAATGTCCTTCCTCTCTATCAGCAGACTAGCCCCAAGGCTCCTCAGTTCAAAGaATGCAGCATGTGTTGTTGTGGCTGCCAGAAATGCCAGCGCATCCACGAATTTGAAAGATGTCCTGTCAGACCTCGTCCCTAAAGAACAGAGCAGGATCAAGAACTTCAAACAGCAGTATGGCAAAACCTCAATTGGTCAGATCACGGTGGACATGGTTTATGGAGGAATGAGAGGGATGAAGGGTTTAGTTTACGAGACATCTGTACTAGACCCTGATGAGGGCATCCGTTTCCGTGGTTACAGCATTCCAGAGTGTCAGCAGTTGTTGCCCAAGGCTCCTGGTGGAGAGGAGCCACTGCCGGAGGGTTTGTTCTGGTTGCTGGTCACAGGGCAGGTGCCCACTGAGGAGCAGGTCAGTTGGCTGTCTAAGGAGTGGGCCAAGCGCGCAGCCCTTCCCTCTCACGTGGTCACCATGCTGGACAACTTTCCCACCAACCTGCACCCCATGTCTCAGTTCAGCGCCGCCATCACTGCTCTGAACAGCGAGAGCAGCTTCGCTCGGGCGTATTCTGAGGGAGTTAACAAGGCCAAGTACTGGGAGTTTGTGTATGAGGACTCCATGGACTTGATCGCCAAGCTCCCCTGCGTGGCAGCTAAGATCTACCGTAACTTATACCGTGAAGGCAGCAGCATCGGCGCCATTGACTCCAACCTGGACTGGTCACATAACTTCACCAACATGCTGGGATACACCGAGCCACAGTTCACAGAGCTCATGAGGCTCTACCTCACCATCCACAGTGACCATGAGGGTGGAAACGTGAGCGCACACACTAGTCACCTGGTAGGAAGTGCACTATCCGACCCCTACCTCTCCTTCAGCGCTGCTATGAATGGTCTGGCAGGACCCCTGCATGGATTGGCCAATCAGGAGGTGCTGGTGTGGCTGACAGCCCTGCAGAAGGAACTCGGTGGTGAGGTGTCCGATGAGAAAATGAGAGATTACATTTGGAACACGCTCAAATCAGGCAGAGTTGTGCCAGGCTATGGTCACGCTGTGCTGAGGAAGACAGACCCTCGCTACACCTGTCAGCGAGAGTTTGCCCTCAAGCACCTTCCCAATGACCCTATGTTCAAGCTGGTCGCTCAGCTTTACAAGATCGTACCCAATGTGCTTCTGGAGCAGGGCAAAGCCAAGAATCCCTGGCCCAATGTAGATGCACACAGCGGAGTCCTGTTGCAATATTACGGCATGACTGAGATGAACTATTACACTGTGCTCTTCGGCGTATCCCGGGCTTTGGGTGTCCTCGCCCAGCTGGTGTGGAGCAGAGCGCTGGGCTTCCCTCTGGAGCGTCCCAAGTCCATGAGCACAGACGGACTCATGGCTCTAGTCGGGGCCAAGTCAGGCTAGAGAGGGAGCGACCATGCCAGCGGAGTGAGAACAGAAAGGGGGAGGAGCTTAAGCTATTAGAACAACCCTCCAGGCTAAGGGATTCAAAGAGACAGTACACTTTTAAATTTCTTCTAAAAAGGGCCTTTGTTGATATATATAACGTCAAGATCACACATCCCATTGACACTCTTCTATTAGTCCACGCATTGCACAAACCATCACACTTCAGTTTTCCCAGCTTGAATGACGCAGCTATGGATGTAGCAGGGTGGTTTTGATGAAGGAGGCTGCGTTATTGTCCAGCagcaaaatatcttctctttaatcacctatttaaaataataacgaCTATTGAATACTAGTTAGTCGACTTCAGTATGTAAATAAACCCCTTATCCTCAGCAGTCGCGCCACACTATTTCAGTTTTAGTCTTGTATTTTACTCTCCCGAGGTCAGATGTTCACTTTGttcgtttgaggaaaccaatcaTCAAAGCCCTGTTTCTGAGCTAATTTGACTACGTTTGACTTTAGCTAACATCGCGTTTCTCCTTGTAAGAGCACTCCATGATGGCAAAAAATAGGTCCTCTCTCAATAGAATTGATTCTATGAGTTCAGTTCAACTTGGGGAAGcttgtatatttgtttaaaagGGTACTGCCCCTTTAATAAGTTATCTCTCATATTGCTCTCTGACTTAAACCAATCATCTTCATCGCAATACTACCGTCTTTATTCCAAATCTTCTATTTGTGGACAACATTTGGCTGATTTGTGTCATTTACACAAGTTATTGAGGTCAGATTTGTTTATCAGCTTGAGAGCAAGTCGAATTTGTATTTATACGTTCATCCAAGAGTGCTTAAAAATctgatacctttttttttttttttactcgttGAGAGTTTTATTGTCCagtgttttgaagaatgatgtctTGTGTAAAGAGAAAAGCTATCATTTTGTGTAGGTATACATAAGTCGTGGTTTTATTTATTCCTGTAAATATAGCTTGAATGTATTGAACTGCATATCAAAACACTGTCCCACCATCCCTGTTAGGTAATGACTGGCTCAACCCTTTATTTTAAATACCTTTAAGATTATTTAAACATGGCTGGTGCGTGTAACGGTCTGATCAGACCCCTGTTTGGGTGCTGCTCTATTGCACGCTTGCTCTCAggttggcgtttttttttttttcctggacaaTCTAGCTGGTATCTATTTTAGCTAGTCGCTCCATAAGCACTCCATTAACTTGATGGCACTTTtcccttcatcatcatcatcatcatcaattctGTGTGTTGAACCCCAGTCATCCAAGAACATATTTTGTCTGATTTGCTGTGCCCTTTTCTGTTGCGGCTGTTTTCATTATGATGAATTTGATTGGTTTATGCTCCATTGAGTTGATTTCAATAACAGGGAATGTGAATATGGAGATGATTGGTTGAAGTCAGACCCACCAGGGGGAAATGGGGAGGGGAAACAAGAGAATGGGGTTACAAAAGGAGTCTGGATTGATTGTGAAAAAGAAGCTTAGGtgaacaaaacagaaaaatgtgGGAAAATTGACAAAAAACGAAAAccaataaatgtttttaacaaaa

Function

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer molecular_function
GO:0004108 citrate (Si)-synthase activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00630 Glyoxylate and dicarboxylate metabolism
ko00331 Clavulanic acid biosynthesis
ko00998 Biosynthesis of various secondary metabolites - part 2

ZFIN:

id description
ZDB-GENE-030131-1058 Predicted to enable citrate (Si)-synthase activity. Acts upstream of or within response to activity. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Is expressed in brain; gill; heart; and muscle. Orthologous to human CS (citrate synthase).

Ensembl:

ensembl_id ENSDART00000159445

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044857 lncRNA upstream 448634 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00044856 lncRNA upstream 1328465 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044677 lncRNA upstream 1345085 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044855 lncRNA upstream 1420173 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00043257 lncRNA upstream 1497972 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00043283 lncRNA downstream 50395 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043285 lncRNA downstream 59139 33987455 ~ 33991280 (+) False XLOC_021832
TCONS_00043291 lncRNA downstream 111078 34039394 ~ 34043302 (+) True XLOC_021834
TCONS_00044859 lncRNA downstream 119100 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00044858 lncRNA downstream 119100 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00043275 mRNA upstream 6562 33777519 ~ 33901337 (+) True XLOC_021825
TCONS_00043273 mRNA upstream 150157 33752275 ~ 33757742 (+) True XLOC_021823
TCONS_00043272 mRNA upstream 178347 33718602 ~ 33729552 (+) True XLOC_021822
TCONS_00043269 mRNA upstream 463844 33383583 ~ 33444055 (+) False XLOC_021819
TCONS_00043270 mRNA upstream 463844 33413804 ~ 33444055 (+) True XLOC_021819
TCONS_00043278 mRNA downstream 5912 33934228 ~ 33951831 (+) False XLOC_021828
TCONS_00043279 mRNA downstream 19558 33947874 ~ 33953106 (+) True XLOC_021828
TCONS_00043280 mRNA downstream 29034 33957350 ~ 33961989 (+) True XLOC_021829
TCONS_00043281 mRNA downstream 35303 33963619 ~ 33975156 (+) False XLOC_021830
TCONS_00043282 mRNA downstream 35331 33963647 ~ 33976116 (+) True XLOC_021830
TCONS_00043276 other upstream 77709 33828665 ~ 33830190 (+) True XLOC_021826
TCONS_00043274 other upstream 147234 33759747 ~ 33760665 (+) True XLOC_021824
TCONS_00043271 other upstream 369730 33538051 ~ 33538169 (+) True XLOC_021821
TCONS_00043268 other upstream 487059 33381154 ~ 33420840 (+) False XLOC_021819
TCONS_00043266 other upstream 598314 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043288 other downstream 74441 34002757 ~ 34002873 (+) True XLOC_021833
TCONS_00043293 other downstream 119100 34047416 ~ 34053709 (+) False XLOC_021835
TCONS_00043296 other downstream 119247 34047563 ~ 34185009 (+) False XLOC_021835
TCONS_00043297 other downstream 125190 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043302 other downstream 1474381 35402697 ~ 35461009 (+) False XLOC_021842

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_03515448_03525499.mRNA True 2027 mRNA 0.51 11 CI01000001 3514972 ~ 3525499 (-)
bowfin (Amia calva) AMCG00008705 True 1212 mRNA 0.60 7 CM030126.1 9197433 ~ 9205392 (-)