XLOC_021575 (ptk6b)


Basic Information

Item Value
gene id XLOC_021575
gene name ptk6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17387325 ~ 17404011 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042833
TTTCACTTTAGTGACAGTTCCTCAAAGCATCGCGCTCATATGGGAATAATCCGCGAGAGCAGGTGCTTTTTACCTCATGGGGGAATGTTGTAGGAAAACTTGCCCATGTCTCAAGACAATATGGGACAAAATATACGGACCACCACAAGCGGAGGGGGAAAATAGCGTGAAAGTTGACGGTGACTTTACGAACAAGGGCTTCGACAAGAATGAGACTGAACGCCGTTATTCGAAGCCGAAGATCAAGCCGCCTTTACCACCGAGTGCAAACAACAATGCTGCTATTTACATGGCACTGTGGGACTTCAAGGCGCGCAACGACCAGGAGTTGTCCTTTAAAGCTGGAGATAAGTTCGAGATTACCGACCGTTCCGGTGACTGGTGGACTGCCAATAAAAAGGACATATTCGGCCGTGTGACCACCGGTTTTGTTCCTTACAATTATCTGGCTCGAGATTCCGTAGAGTCTCAACCGTGGTTTTTTGGAAAGATGAATCGTGTTGGAGCAGTGAGCCACCTCATGTCTGATGAAAATAATTATGGATCTTTTCTTGTGCGGGTCAGTGAGAGTGACGACATGGGCTACGTActgtcagTGAGGACAAAGGAAAATGCAAAGCACTTCAAGATCTTTCAGACTGGTGATCAGTTCTACGTGGATGCGTTGTTTAAGTTCAGCAGTATAGTAGAAGTGATTGAACATTATCAAAGTCACCCACTCTCCATTGGGGACCTACTGAGTGAGCCTTGCATTCGGATAAAGCCGGAGAATGTGCCACCTCCCTCAACGGATGAATGGGAGCTGCCTAAAGAGGAATTTCAGCTGGAGAATCAGCTTGGCAGTGGTCACTTTGCTGATGTGTACAGTGGCAAATGGAAAAATCACTCTAAAGTGGCCATAAAAATCCTCAAGAACAACGATGCTCTTGTGCTGAGGGAGTTTCAGTTGGAGGTGCAGATCATGAAGCGTTTACGTCACAAGCACCTGATTTCTCTCTTTGCTGTGTGCACTTCCTCCTCACCGTTTTACATCATCACCGAACTAATAGAAAAGGGCGACTTGCTTCATTTCCTCAGAAATCCAGAGGGAAGATCATTGCAGATGGAGTCTCTGATTGACATGGCAGCTCAAGTGGCAGATGGGATGGCATATTTAGAGGCAAATAACAGTATTCATAGGGACCTCGCTGCCAGAAATGTGCTTGTAGGAGATGGATATGTCTGCAAAATTGCTGATTTTGGCCTAGCTCGAATCATTAAGGAGCCAGTTTATTTAAGCGATGACAAGAAAATACCATATAAATGGACAGCACCTGAGGCCATTGGTCATGGCACTTACTCCAGTAAATCTGATGTCTGGTCCTTTGGGATTCTCCTTTATGAGATTGTTACTCATGGAGGAATACCTTATCCAGGTGTCAACACTGGTGAGGTGTATGATCTCATAACGAAGGAAAACTACAGAATGCCTTCACCACCCAAGTGTCCACAAGCCATTTACAACATCATGCGAGCTTGCTGGAGAATAGAGTCAGTGGACAGACCCAACTTTAAGGTTTTGAAGGATGAGCTGGACAACTATCAAGGCCAATATAGCAGTGTGGGAAATTAACACAGACAGATAACAACATCCTGTTGGCTGAAACTTTTCTAAAAGACAGATCCATCATATAATCATCTTCAATGAATTAAATGGACTGGCAATTAGTCCACCGTATCAGTTTTCAGAAAATGAGGATGCGCACTTGAAGCACTTTTTGGAAGCTCTTAGGGAATAATTTATTGGGGTTTTGGGCAatatactgttttattttataatgaacaATGTTAAAGAGTAGATTGTACTGATTTGAAGACCacgaaataaatgtttaaatctgtAATTAACAGTTTAGTCAATCAGATCAGTTCTGGGGCATCAAAAGGTTTGTAAAAATGTctgattatatactgtacagatACACAACCCTATACAAACCAACACAATATGAATGATAGTTGTATATAAACATGGTATTATCATAGTGAACATGaagctaaattaatatttcaaagaatatataaaatgataaatgatatgtatatttatgatgatttttgtattttaaatattgagTAATTTGTAAACTGTAATAGTGCACTGCATTGTTGATTTTTGCAATTTACCCAAGCTAATTCTTCAGTGCAGTCATAATTACCAGACTTTTAAGAAAGAAAGTGCATGCAAGATTAGACAAAAATTATGTTATTCatacttttaacttttattccAAATAGACACAATCCTAGTGTACATGACCTCTAAAGTTTATGaccttttataataaaaaattaactgAT

Function

symbol description
ptk6b Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human PTK6 (protein tyrosine kinase 6).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1150 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human PTK6 (protein tyrosine kinase 6).

Ensembl:

ensembl_id ENSDARG00000059956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042833 True 2340 mRNA 0.40 8 17387325 17404011

Neighbor

gene id symbol gene type direction distance location
XLOC_021574 SRMS coding upstream 2076 17354154 ~ 17385249 (+)
XLOC_021572 nol4lb coding upstream 41070 17220986 ~ 17346255 (+)
XLOC_021573 NA coding upstream 132568 17254498 ~ 17254757 (+)
XLOC_021571 BX927275.1 coding upstream 175519 17146315 ~ 17211806 (+)
XLOC_021570 commd7 coding upstream 273233 17102960 ~ 17114092 (+)
XLOC_021576 NA coding downstream 8514 17412525 ~ 17447163 (+)
XLOC_021577 BX649300.3 coding downstream 33543 17437554 ~ 17465232 (+)
XLOC_021578 NA coding downstream 69108 17473119 ~ 17477448 (+)
XLOC_021579 BX649300.4 coding downstream 97303 17501314 ~ 17501428 (+)
XLOC_021580 gid8b coding downstream 105783 17509794 ~ 17550653 (+)
XLOC_021565 AL732515.2 non-coding upstream 528292 16858917 ~ 16859033 (+)
XLOC_021561 NA non-coding upstream 588603 16798100 ~ 16798722 (+)
XLOC_021556 CU041345.1 non-coding upstream 941285 16444961 ~ 16446040 (+)
XLOC_021581 CR407550.1 non-coding downstream 252825 17656836 ~ 17659102 (+)
XLOC_021582 NA non-coding downstream 366413 17770424 ~ 17776345 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_04701645_04713999 NA coding CI01000001 null 4701645 ~ 4714153 (+)