LOC110520884 (LOC100136250)


Basic Information

Item Value
gene id LOC110520884
gene name LOC100136250
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8878988 ~ 8887653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967983.1
GGATATAAGGCCAGAGCTGCTTCATCACCGCACAACTGCCTCTTCAATCTACTGCTCCTAAATACTTGGAAGTTCATTTAAGAATTTGAGAATCATGAGTATGAACTACATGAGCACTGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTACGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAAAAGGATGGCAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGTCAAGTAACACCGCCCGTTGCAACAATACACAAAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTACAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCGGCCCAACAATGCACAGAGGTCACCTCACCCTCACTGACGAAGGTGCCCTGATGCTCTACAGTCCCAGAAATGTGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGACCATACCTGTCTACATCTACCACTAAACTGTATTCAAAAGCCTTGAGGCTTTAACCCTTTGATTTGGTCAAATAAAACTGTATTGACTTAAAGTAGTCATTTGTGTTGTAAT

Function

NR:

description
mannose-specific lectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967983.1 True 680 mRNA 0.46 3 8878988 8887653

Neighbor

gene id symbol gene type direction distance location
LOC110516769 LOC100136250 coding downstream 16757 8853815 ~ 8862231 (-)
LOC110520835 ash1l coding downstream 39309 8804651 ~ 8839679 (-)
LOC110520892 LOC106605923 coding downstream 175725 8699031 ~ 8703263 (-)
LOC118964372 NA coding downstream 176971 8701883 ~ 8702017 (-)
LOC118964373 NA coding downstream 177390 8701463 ~ 8701598 (-)
LOC110520883 LOC100136250 coding upstream 24786 8912439 ~ 8921058 (-)
LOC100136250 LOC100136250 coding upstream 51167 8938820 ~ 8949179 (-)
LOC110520856 LOC106591015 coding upstream 86303 8973956 ~ 8982283 (-)
LOC110520814 LOC106595728 coding upstream 100431 8988084 ~ 9050862 (-)
LOC110501040 LOC106605812 coding upstream 213772 9101425 ~ 9118437 (-)
G222009 NA non-coding downstream 75322 8803105 ~ 8803666 (-)
G222007 NA non-coding downstream 75969 8801951 ~ 8803019 (-)
G221988 NA non-coding downstream 107055 8770564 ~ 8771933 (-)
G221987 NA non-coding downstream 111512 8763986 ~ 8767476 (-)
G221975 NA non-coding downstream 156170 8718840 ~ 8722818 (-)
G222059 NA non-coding upstream 65771 8953424 ~ 8953678 (-)
G222064 NA non-coding upstream 76099 8963752 ~ 8963983 (-)
G222066 NA non-coding upstream 83823 8971476 ~ 8972335 (-)
G222412 NA non-coding upstream 97991 8985644 ~ 8987837 (-)
G221986 NA other downstream 115104 8763119 ~ 8763884 (-)
G221807 adar other downstream 355780 8503184 ~ 8523208 (-)
G221806 NA other downstream 468179 8394361 ~ 8410809 (-)
G221788 LOC106574877 other downstream 528699 8345683 ~ 8350289 (-)
G222465 NA other upstream 205527 9093180 ~ 9095216 (-)
G222607 LOC106574954 other upstream 607143 9494796 ~ 9496853 (-)
LOC110508584 LOC104949237 other upstream 643521 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 other upstream 674092 9559133 ~ 9594654 (-)

Expression


Co-expression Network