LOC110520821 (LOC106574299)


Basic Information

Item Value
gene id LOC110520821
gene name LOC106574299
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9559133 ~ 9594654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963782.1
GATTCAGACctttgtgtgtatttatttatttaatatttcaGTTGCGTGCGTGCCTAAGAGGTGACGGGTGTTTTGGAAGTCCGCCTGCAATCGGAATCAGAATAGTAAGACTGGTGTCGCGTTCCTTTTGAGTTATGATTGGCCATAGAATTGCCTATTTAAATATTTGGCTATTCCTTCTCAAGCTCAACAAGTTATTCCGGTTGGAACAGTTCTTCGTGGATATAATTCATTCAAGTGCACTTAATTTCCTTGCATGGTTTGATTAATCAAGATTCGTTAAAAACATGTAAATGAAACGAAGGTTTTGTTCATCGTAAATTAATAGGATGGGCTCCAAAGATGTCGCTGTAACGGTCCAAGGATGTCATTGGGAGTGACTGGAGAAGTGGAAGAGGAGGGGAAACGCGTCTGAAATAGCAGAACATTTATCCGGGCGGATTTGCAGACGTCACATATTCTGCACTTGCCCAGGTAGCCAACCACCCAAAACTACCACCTCTCATCCACTGTCAAGATGAACTCTTACAGAATACTACCATGTGTCGATGAGAGCAAGAAGGAGACATATCCTTGACAACCAGAGAGGGAGGGTCAAAGAGCGACCTGCGTCATTAtccctgagagagagaccaggaattAGGTGCCAATATGCCTGTTGTGGAAACGCTGAGGACGGCAGTAGAAAGGAGAAGGTGGGCCTCAGGCCAGGAGAACAAGGGAGGATGGAGAGTTCTCCATGAAGAAAAGCGAGCTGGGGAAAGGAGGAGATAAgagaaagcactgccagcatatTTTTGGAGTGACAAATCTATTGTTTTTACATGGCAAACACCCAGAGGTGGGGTTAGGATGCACAGATCAGTGGAGAGGAGACAGATCACTACAATCTCCATTGGAGATTATAAAAACTTGAGGTCAACTATTTAATCACCACCATTCTCTTTCCCCTGACTGTCTTAGCTAGTAGCCTGTTATTAGGCTCCTAGTTGAACATTGACAGGACATATTGTCCCGTTTTGACAATCTGTTTCCAGCGTGAGAGTGACAGATTATATTGATCTCCCTTTGTCCCCCTTCTCCCTGGTTAGGGGATGGATGGGGTGGCGGGAGGTGTTGGGCCCCCTGGCGGGGGTGAGGGTCGGCCGGGTCGTAGTGGAGGAGACTCTAAAAGGCGCAGTAAGGGCAGCCTGCCCTCCCCAGGGTACCGCCTCTCCCAGGCATCGCTGGAGGGTGACAGGTCAGGGGTCGAGGGTTCCGGTTCCGGAGGGGGGCGACGGCGCCTCTCCATCTTGAGTGCCACCAGAGACGTCCTCCCCTTCCATTCAGCTGGCACTCCGACCACCCCTGTCCCCCTGCCCCCTCCTCCAGCCCCCTTCTCCTCCGCCCAGCAGCGTTCTGTTGGCTTTTCCTCGTCACGCGCCGCCCttgcctccacttcctcctccaccGGCACCGGAGTGGTCGTCGTAGCGTTGGGCCCGGAAACCACGACAACCACGGCTTGTAACACCGTGGCGGGCACGCCGGAGATGGGGAGTCTGTCTGGGACAGGGGGCATGGGGGGGTTTGGGATGGGTCTAGACGGGGAGGACTACAGCTACTCCAACCAGTCCACCTTcatccagagacagtttggagcCATGCTGCAGCCGGGGGTCAACAAGTTCAGCCTGCGCATGTTTGGGTCCCACAAGGCCGTGGCCATGGAGCAGGAGAGACTCAAATCAGCAGGGGAGTGGATCATACACCCCTACAGCGACTTCAGgttCTACTGGGATCTGATCATGTTGTGTTTGATGATGGGGAACCTGATCATCCTGCCAGTAGGAATCACCTTCTTTAAGGATGAGAACACTCCTCCCTGGATCATCTTCAACGTGGTCTCTGATACTCTCTTCCTGGTTGACCTGGTCCTCAACTTCAGGACCGGTATCGTCAAGGAGGACAGCACTGAGATACTGCTAGACCccaaGGCTATCCGTCAGCGCTACCTAAAGAGCTGGTTTGCGGTGGACTTTGTGTCGTCCATCCCTGTGGACTACATCTTCCTGATGGTGGACTTGGAGGCCCGGCTGGACTCAGAGGTTTACAGGACGGCCAGGGCCCTCCGCATCGTACGCTTCACCAAGATCCTCAGCCTGCTACGCCTGCTGCGCCTGTCACGACTCATACGCTACATCCACCagtgggaggagATCTTCCATATGACCTATGACCTGGCTAGTGCCATGGTGAGGATAGTCAACCTGATAGGCATGATGCTGCTGCTGTGCCACTGGGACGGATGTCTACAGTTCCTGGTTCCCATGCTGCAGGACTTCCCCCTGGACTGCTGGGTCTCCAAGAATAACATGGTGaaTGATACGTGGGGGATCCAGTACTCCTATGCACTTTTCAAGGCGATGAGCCACATGTTGTGTATTGGCTACGGTGCCCAGGCTCCAGAGGGCATGACAGACGTGTGGCTCACCATGCTCAGTATGATCATTGGTGCCACCTGCTATGCCATGTTCATCGGCCATGCCACCGCTCTCATACAGTCCCTGGACTCCTCAAGACGACAGTACCAGGAGAAATATAAGCAGGTGGAGCAGTACATGTCGTTCCATAAGCTCCCTGCAGATGTCCGTCAGAGGATTCATGAGTACTACGAGCATCGCTTCCAGGGCAAGATGTTTGACGAGGAGAACATACTGGGTGAACTCAGCGAACCACTAAAGGagGCGATAGTTAGCTTTAACTGCCGTAGCCTGGTGGCTCACATGCCGCTGTTTGCTAACGCGGACCCTAACTTTGTGACGGCAGTGCTGACCAAGCTTCGCTTCGAGGTGTTTCAGCCCAATGACTTCATCATCCGTGAGGGCACGGTGGGACGCAAGATGTACTTCATTCAACACGGACGAGTCGGCATACTCACCCGCGGAAACAAGGAGACCAAACTCAGTGACGGGTCCTACTttggggagATCTGTCTGTTGACTCGGGGCCGGAGGACGGCGAGCGTCAGAGCAGATACATACTGTCGTCTCTACTCCCTCAGTGTGGACAGCTTCAACGAGGTCCTGGAGGAACACCCTATGATGAGGCGGGCCTTCGAGACGGTGGCCGTCGACCGGTTGGACCGCATCGGTAGGAAGAACTCTATCCTGATGAGGAAGCCGTCCCAGGCGGGTTCCATGGCGGGGGGCAGCGGTTTGGGGCGTGGGGGtcgaggaggagggggggcagggcTAGGCATGGGGGGGCTGGGCTCCTGTGACAGCATGCTGGTTCAGCAGATCGTTAAACACGACAGCATGCCAGCCATGCAGGAGGCCATCGCTGCTGCCGCTGCAGGAAGGGGAGGGGCCACGGGAGGAAGTGGTACGGTCTCCCCTAGGCCCCACCCACTGATCTGGGCTCCACTGATCCACGCTCCGCTCCAGACGGCGGCCGCTACGACTAACGTGGCCATCGCCCTCAtgcaccagcagcagcagcaacagcagcttCAACATCAGCTACAGCAGCAACATGCGCTAGGAGGCGCTAtattcctcccctccatctctccatcgtcctccgtctccttccccctctcccccccgcGGCCCCCTGTCCTGCAGCCCCTGCGCCCCTCTGTGAGTTCCCTCATTGGGATGATGGGGGTAGGAGGGATGGGGGGGCTGTCCCCTAGAGGGGGGTTTCCTGCCTTCCCCTCCCCCTCGCCCTTCCCCATGGCCCCCCCGGGAGGTGTGATATCACCCCCTGTTACTCAAACCCCACCCACACCGGCCTCCTCTGTCTCCACGTCGGTCCAATTAGGAAAGACCCTGCACTACAGTCTCCGCCTCCACCCGGAACACTCTTCAGTGATGGGTGGAACCCCAGGAATCCCCAAGGTAGGAGGGGCCACCACACCCCATCTGTTCTACCACGTGAATCCAACTGCAGCCACCAGTGTCATGTCAGACACTTGCAGTTCCATGGCTGGCCAGCATGGAGCCAAGGAGGCGCTATTGCGTCATGGAGGCAGCAGCAACCAGGGCCTGCCTGCACTTGGGAGGCTCACCCAGGAGGCCAGGCTCCTCTCTGCCTCGCAGCCCACCCTGCCTCATCGATCCTGGGCAAGCATGCAgcctcacccccctctccagcGGAAGGCCTCTGGAGGTAACCTGCTGCCAGCCTCGTTCCTGGCTGGGACGCAGCTAGCCAGGGGTGGCAGTGTGGGGGTGTTGACTACTCCCCTACCAGTACAAGTCCCAGCACAACGGTTACAGATGCCCCCCTTCAATGCACAGATACAAGCACATAACCTGGGCTCTATACAGCCCCTCCCTGATCCTGCCTCTACACActgccctgcacacacacacacagccacacacacacatcctgtcgCTGTACCTGCATCCACACCCACATCAGCTTCTCCCCTGGCCTCCTACACTTCCTCCCCCAAAcaaacccccctctcctctgccaCCCCCTCCCCTGCTCCAGCTCCTTTCTCCCTCATCCCAGCCCTGCCACTAACCCCTCGCCCCAAACTCACCCCTACACCCCCatctcgctcctcctctcctcccccctgctccatccctccctctgccgGAACTACTCCACTCACCTCAACCCCTCGCCCCAAACTCACCCCTACACCCCCatctcgctcctcctctcctcccccctgctccatccctccctctgccgTAACTACTCCACTCACCTCAACCCCTCGCCCCAAACCCACCCCTACACCCCCatctcgctcctcctctcctcccccctgctccatccctccctctgccgTAACTACTCCACTCACCTCAACCCCTCGCCCCAAACTCACCCCTACACCCCCatctcgctcctcctctcctcccccctgctccatccctccctctgccgGAACTACTCCACTCACCTCAACCCCTCGCCCCAAACCCACCCCTACACCCCCatctcgctcctcctctcctcccccctgctccatccctccctctgccgGAACTACTCCACTCACCTCAACCCCTCGCCCCAAACCCACCTCTACACCCCCatctcgctcctcctctcctcccccctgctccatccctccctctgccgGAACTACTCCACTCACCTCAACCCCTCGCCCAACCCCTCGCCCCATACCCACCCCTACACCCCCatctcgctcctcctctcctcccccccgctccatccctccctctAGCCCCCTAATCAAGTCCTCCCCTACACCCCCCTCCCCTTACCCTCTATCTGGGCCCACCCCTACCCCCTCTAAAGCCTTTACCCCTATCCAGACTCAGCCAAACCCTAACTGCAACCCCTACCCCAGCCTCCACTCCCACCCCAGCCCCCACCCCAGCCTCCACTCCCACCCCAGCCCCCACCCCAGCCTCCACTCCCACCCCAGCCTCCACTCCCAACCCAGCCTCAACTCCCACCCCAGCCTCCACTCCCACCCTAGCTCCAACCTCAACCTTGATTCCCACCCCTTCTTCCAGTAA
>TU254285
GGACGCAAGATGTACTTCATTCAACACGGACGAGTCGGCATACTCACCCGCGGAAACAAGGAGACCAAACTCAGTGACGGGTCCTACTttggggagATCTGTCTGTTGACTCGGGGCCGGAGGACGGCGAGCGTCAGAGCAGATACATACTGTCGTCTCTACTCCCTCAGTGTGGACAGCTTCAACGAGGTCCTGGAGGAACACCCTATGATGAGGCGGGCCTTCGAGACGGTGGCCGTCGACCGGTTGGACCGCATCGGTAGGAAGAACTCTATCCTGATGAGGAAGCCGTCCCAGGCGGGT

Function

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963782.1 False 5501 mRNA 0.58 12 9559133 9594654
TU254285 True 303 TUCP 0.39 3 9561745 9562965

Neighbor

gene id symbol gene type direction distance location
LOC110508584 LOC104949237 coding downstream 7490 9528874 ~ 9551643 (-)
LOC110508594 LOC106605789 coding downstream 33820 9515908 ~ 9525313 (-)
LOC110508582 LOC106575046 coding downstream 107884 9446264 ~ 9451249 (-)
LOC110508575 prpf3 coding downstream 158011 9390287 ~ 9401122 (-)
rprd2b LOC106605802 coding downstream 168861 9376499 ~ 9390272 (-)
LOC110536519 LOC106573729 coding upstream 8547 9603201 ~ 9641233 (-)
cyp11b cyp11b coding upstream 46984 9641638 ~ 9653952 (-)
LOC118945353 LOC106594169 coding upstream 59639 9654293 ~ 9656911 (-)
LOC118944443 LOC106573533 coding upstream 71208 9665862 ~ 9673439 (-)
LOC110534283 LOC106573819 coding upstream 85104 9679758 ~ 9689081 (-)
G222607 LOC106574954 non-coding downstream 62280 9494796 ~ 9496853 (-)
G222600 NA non-coding downstream 82233 9474040 ~ 9476900 (-)
G222511 NA non-coding downstream 113431 9445037 ~ 9445702 (-)
G222505 NA non-coding downstream 114281 9441801 ~ 9444852 (-)
G222586 NA non-coding downstream 134668 9424179 ~ 9424465 (-)
G222657 NA non-coding upstream 366 9595020 ~ 9595330 (-)
G222658 NA non-coding upstream 1051 9595705 ~ 9599657 (-)
G222661 NA non-coding upstream 18010 9612664 ~ 9623056 (-)
G222662 NA non-coding upstream 25557 9617625 ~ 9622934 (-)
G222672 NA non-coding upstream 42595 9637249 ~ 9637907 (-)
LOC110501040 LOC106605812 other downstream 440760 9101425 ~ 9118437 (-)
G222465 NA other downstream 463917 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 609946 8853817 ~ 8949187 (-)
LOC110508696 ndufa3 other upstream 406761 10001415 ~ 10002941 (-)
G223070 NA other upstream 418307 10012961 ~ 10014892 (-)

Expression


Co-expression Network