LOC110508594 (LOC106605789)


Basic Information

Item Value
gene id LOC110508594
gene name LOC106605789
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9515908 ~ 9525313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589228.2
CACACTGTACCCAGATTCACTTCTGCGGATGATGCAGGGAGGAATGTCAACCAGCCTCGACACGGGTGGCTTTGGGTTGACGCAGGCAGACGGAACGTCATAATCCAATTAGCAGCACTAGTTGAGTTCGCTAACCCAACTAGCTAGCCTGGACAACAACCGACTGAACTGCTAACGAAACTGAACGTTTTGTCATTTTTGAGACAGCAGTGACCAAGTCTGGGAGAGAAGCAACAACCCAAAGAGGGAAACCTTTCAGGTTAATCAACAACATCATTGGTCATCTAATGGCAGGAAGGATGCTGACGCTACGTCGGATGCTAGCGAGCACAGGTGCGCACTCGGCCGCGGCGCAGCAGTGCGTCTCGCCTCATCTGGCCCAGCGCTACAGCACCGCAGCAAAGCAACAGGAGAATCCAAAGAAGACTAAATTTGGGCCCTTGAGTGATCAAGACCGAATTTTCACAAACTTGTATGGCCGTCATGACTGGAGTCTGAAGGGTGCTCTGCGTCGGGGTGACTGGTATAAGACTAAAGAGATCCTCCTGAAGGGGACAGACTGGATCCTGAATGAGGTCAAGGTGTCTggtctgagagggagaggaggagctggCTTCCCCACCGGCATGAAGTGGGGCTTCATGAACAAACCCAGCGACGGcagACCTAAGTACCTGGTAGTGAATGCAGATGAAGGAGAGCCAGGGACGTGTAAGGACAGAGAGATCATGCGTCACGACCCTCACAAGCTGGTGGAGGGCTGCCTGGTGGCTGGGAGGGCCATGGGAGCCCACGCCGCTTACATCTACATCAGAGGAGAGTTCTACAACGAGTCCTCCAATACACAGGTGGCGATAAACGAGGCGTATGCAGCAGGGTTGATAGGCAAGAACGCGTGTGGCTCTGGGTACGACTTTGATGTGTTTGTGATGCGGGGGGCAGGAGCCTACATCTGTGGGGAGGAGACGGCCCTCATCGAGTCCCTGGAGGGCAAGCAGGGGAAACCCAGACTCAAACCACCCTTCCCCGCTGACATAGGGGTGTTCGGATGCCCAACAACGGTTGCTAATGTGGAGACGGTTGCTGTGGCACCTGCTATCTGTCGTCGAGGTGGAGCGTGGTTTGCGAGCTtcgggagagagaggaatgctgGGACAAAGCTGTTCAACATCTCTGGTCACGTAAACACTCCGTGCACAGTAGAGGAAGAGATGTCCATTCCTCTCAGAGAACTCATAGACAGACACGCagGAGGTGTGAGGGGCGGCTGGGACAACCTACTGGGAGTGATCCCTGGAGGCTCCTCCACACCCATTATCCCTCGCTCTGTGTGTGATGATGTCATGATGGATTTTGATGACCTCGTCCGCGCAGAGTCCGCTCTGGGCACCGCCGCCGTCATCGTCATGGACAAATCTACTGATGTAATCAGAGCCATCGCCCGTCTGGTTGAGTTCTATAAACATGAGAGCTGTGGGCAGTGCACCCCCTGCAGGGAAGGAGTGGACTGGATGGATAAGATGATGTGGCGGTTTGTGCGTGGCGACGCGGCCAACTCTGAGATTGATATGATCTGGGAGCTGAGTAAACAGATCGAGGGCCATACCATCTGTGCCCTGGGGGACGGGGCTGCATGGCCTGTACAGGGTCTGGTTCGCCACTTCCGTCCGGTCATGGAGAGCCGCATCTCGGAGTACCACAAGAAGAACCCTGCCAGGGAGGCTGACATTGAGATGATCTGAGACTAAACTCCCTGCTCCTAACATGCTGATCTTATCACTCCTCACTTCAAATCATTTCCATTGCTCAATGACTGCTTCCGTTTTATTGGGTATTTACTGTATGTTAATGAACCTAGCACCTATTCAATACCAACCCACTTTGTTTGTTTTCATGTTGTTATTGTGTTCATGTATTTATTCATTTCATGTATGTACTTCAGATGACCTCTGAATATACAAGGAAAGTGCACACACTAATAAAGTTCAATCAATCTGG
>XM_036968185.1
CACACTGTACCCAGATTCACTTCTGCGGATGATGCAGGGAGGAATGTCAACCAGCCTCGACACGGGTGGCTTTGGGTTGACGCAGGCAGACGGAACGTCATAATCCAATTAGCAGCACTAGTTGAGTTCGCTAACCCAACTAGCTAGCCTGGACAACAACCGACTGAACTGCTAACGAAACTGAACGTTTTGTCATTTTTGAGACAGCAGTGACCAAGTCTGGGAGAGAAGCAACAACCCAAAGAGGGAAACCTTTCAGGATGCTGACGCTACGTCGGATGCTAGCGAGCACAGGTGCGCACTCGGCCGCGGCGCAGCAGTGCGTCTCGCCTCATCTGGCCCAGCGCTACAGCACCGCAGCAAAGCAACAGGAGAATCCAAAGAAGACTAAATTTGGGCCCTTGAGTGATCAAGACCGAATTTTCACAAACTTGTATGGCCGTCATGACTGGAGTCTGAAGGGTGCTCTGCGTCGGGGTGACTGGTATAAGACTAAAGAGATCCTCCTGAAGGGGACAGACTGGATCCTGAATGAGGTCAAGGTGTCTggtctgagagggagaggaggagctggCTTCCCCACCGGCATGAAGTGGGGCTTCATGAACAAACCCAGCGACGGcagACCTAAGTACCTGGTAGTGAATGCAGATGAAGGAGAGCCAGGGACGTGTAAGGACAGAGAGATCATGCGTCACGACCCTCACAAGCTGGTGGAGGGCTGCCTGGTGGCTGGGAGGGCCATGGGAGCCCACGCCGCTTACATCTACATCAGAGGAGAGTTCTACAACGAGTCCTCCAATACACAGGTGGCGATAAACGAGGCGTATGCAGCAGGGTTGATAGGCAAGAACGCGTGTGGCTCTGGGTACGACTTTGATGTGTTTGTGATGCGGGGGGCAGGAGCCTACATCTGTGGGGAGGAGACGGCCCTCATCGAGTCCCTGGAGGGCAAGCAGGGGAAACCCAGACTCAAACCACCCTTCCCCGCTGACATAGGGGTGTTCGGATGCCCAACAACGGTTGCTAATGTGGAGACGGTTGCTGTGGCACCTGCTATCTGTCGTCGAGGTGGAGCGTGGTTTGCGAGCTtcgggagagagaggaatgctgGGACAAAGCTGTTCAACATCTCTGGTCACGTAAACACTCCGTGCACAGTAGAGGAAGAGATGTCCATTCCTCTCAGAGAACTCATAGACAGACACGCagGAGGTGTGAGGGGCGGCTGGGACAACCTACTGGGAGTGATCCCTGGAGGCTCCTCCACACCCATTATCCCTCGCTCTGTGTGTGATGATGTCATGATGGATTTTGATGACCTCGTCCGCGCAGAGTCCGCTCTGGGCACCGCCGCCGTCATCGTCATGGACAAATCTACTGATGTAATCAGAGCCATCGCCCGTCTGGTTGAGTTCTATAAACATGAGAGCTGTGGGCAGTGCACCCCCTGCAGGGAAGGAGTGGACTGGATGGATAAGATGATGTGGCGGTTTGTGCGTGGCGACGCGGCCAACTCTGAGATTGATATGATCTGGGAGCTGAGTAAACAGATCGAGGGCCATACCATCTGTGCCCTGGGGGACGGGGCTGCATGGCCTGTACAGGGTCTGGTTCGCCACTTCCGTCCGGTCATGGAGAGCCGCATCTCGGAGTACCACAAGAAGAACCCTGCCAGGGAGGCTGACATTGAGATGATCTGAGACTAAACTCCCTGCTCCTAACATGCTGATCTTATCACTCCTCACTTCAAATCATTTCCATTGCTCAATGACTGCTTCCGTTTTATTGGGTATTTACTGTATGTTAATGAACCTAGCACCTATTCAATACCAACCCACTTTGTTTGTTTTCATGTTGTTATTGTGTTCATGTATTTATTCATTTCATGTATGTACTTCAGATGACCTCTGAATATACAAGGAAAGTGCACACACTAATAAAGTTCAATCAATCTGG

Function

NR:

description
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like

GO: NA

KEGG:

id description
K03942 NDUFV1; NADH dehydrogenase (ubiquinone) flavoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589228.2 False 1998 mRNA 0.53 11 9515908 9525313
XM_036968185.1 True 1959 mRNA 0.53 11 9515908 9525313

Neighbor

gene id symbol gene type direction distance location
LOC110508582 LOC106575046 coding downstream 64659 9446264 ~ 9451249 (-)
LOC110508575 prpf3 coding downstream 114786 9390287 ~ 9401122 (-)
rprd2b LOC106605802 coding downstream 125636 9376499 ~ 9390272 (-)
LOC110520816 LOC100380759 coding downstream 143974 9347151 ~ 9371934 (-)
LOC110508538 LOC106594717 coding downstream 182571 9233449 ~ 9333337 (-)
LOC110508584 LOC104949237 coding upstream 3561 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 coding upstream 33820 9559133 ~ 9594654 (-)
LOC110536519 LOC106573729 coding upstream 77888 9603201 ~ 9641233 (-)
cyp11b cyp11b coding upstream 116325 9641638 ~ 9653952 (-)
LOC118945353 LOC106594169 coding upstream 128980 9654293 ~ 9656911 (-)
G222607 LOC106574954 non-coding downstream 19055 9494796 ~ 9496853 (-)
G222600 NA non-coding downstream 39008 9474040 ~ 9476900 (-)
G222511 NA non-coding downstream 70206 9445037 ~ 9445702 (-)
G222505 NA non-coding downstream 71056 9441801 ~ 9444852 (-)
G222586 NA non-coding downstream 91443 9424179 ~ 9424465 (-)
G222657 NA non-coding upstream 69707 9595020 ~ 9595330 (-)
G222658 NA non-coding upstream 70392 9595705 ~ 9599657 (-)
G222661 NA non-coding upstream 87351 9612664 ~ 9623056 (-)
G222662 NA non-coding upstream 94898 9617625 ~ 9622934 (-)
G222672 NA non-coding upstream 111936 9637249 ~ 9637907 (-)
LOC110501040 LOC106605812 other downstream 397535 9101425 ~ 9118437 (-)
G222465 NA other downstream 420692 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 566721 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 694841 8804651 ~ 8839679 (-)
LOC118944443 LOC106573533 other upstream 147130 9665862 ~ 9673439 (-)
LOC110534283 LOC106573819 other upstream 154595 9679758 ~ 9689081 (-)

Expression


Co-expression Network