LOC110508696 (ndufa3)


Basic Information

Item Value
gene id LOC110508696
gene name ndufa3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10001415 ~ 10002941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589422.2
ATTATACGACATTATGTAGACTACAGTTCCCATGTTCCCCAGCCCGGCAAAACTACAAAGAGCAACATGGCTGGAATTGGAGCCTTCCTGAAGAATGCGTGGAATAAGGAGCCAGTGGTATTGGCCGCCTGCGCAATTGGACTTCTCGCTGTTACTGTTCCATTAGTGAGTCCCTTAACGAAGTACTCAGGCATGATGAATGCAGCTGTGCCATACAACTACCCAGtccctgTGCGAAACAATGGCAAGATGGGCGATGTCCCCAGCCACCCTTGTGACCCCAAAGGACCAAACCTGGACTGGATTAAAAGCCTGTAACCGTCCACATTCCCTTCCCTGTACAGACCACAGCCCGTTGttcttgtctctctgtgtctgcttcTCAGTAGATGGCCCTCAATAAAGATCATCTATTTAATACCACCAA
>TU254786
CAAAACTACAAAGAGCAACATGGCTGGAATTGGAGCCTTCCTGAAGAATGCGTGGAATAAGGAGCCAGTGGTATTGGCCGCCTGCGCAATTGGACTTCTCGCTGTTACTGTTCCATTAGTGAGTCCCTTAACGAAGTACTCAGGCATGATGAATGCAGCTGTGCCATACAACTACCCAGtccctgTGCGAAACAATGGCAAGATGGGCGATGTCCCCAGCCACCCTTGTGACCCCAAAGGACCAAACCTGGACTGGATTAAAAGCCTGTAACCGTCCACATTCCCTTCCCTGTACAGACCACAGCCCGTTGttcttgtctctctgtgtctgcttcTCAGTAGATGGCCCTCAATAAAGATCATCTATTTAATACCACCAACTTTGCTCTTGGATTCTGTTGGGATGTTGT
>TU254787
CAAAACTACAAAGAGCAACATGGCTGGTGGGTGAACTTTGCATTTAGCGAGCTAGCTGTTTCGTGTTATGCTTGAGTCCTCTGTCAAGCAAACACTGGTGTTCTGATAATGCTAGTGTATGATTAATTGAATTGGAGCCTTCCTGAAGAATGCGTGGAATAAGGAGCCAGTGGTATTGGCCGCCTGCGCAATTGGACTTCTCGCTGTTACTGTTCCATTAGTGAGTCCCTTAACGAAGTACTCAGGCATGATGAATGCAGCTGTGCCATACAACTACCCAGtccctgTGCGAAACAATGGCAAGATGGGCGATGTCCCCAGCCACCCTTGTGACCCCAAAGGACCAAACCTGGACTGGATTAAAAGCCTGTAACCGTCCACATTCCCTTCCCTGTACAGACCACAGCCCGTTGttcttgtctctctgtgtctgcttcTCAGTAGATGGCCCTCAATAAAGATCATCTATTTAATACCACCAACTTTGCTCTTGGATTCTGTTGGGATGTTGT

Function

symbol description
ndufa3 Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Orthologous to human NDUFA3 (NADH:ubiquinone oxidoreductase subunit A3).

NR:

description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like

GO:

id name namespace
GO:0005747 mitochondrial respiratory chain complex I cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589422.2 False 427 mRNA 0.49 4 10001445 10002941
TU254786 False 410 TUCP 0.49 4 10001415 10002894
TU254787 True 512 lncRNA 0.47 4 10001415 10002894

Neighbor

gene id symbol gene type direction distance location
LOC110508630 LOC106605751 coding downstream 41413 9943081 ~ 9960032 (-)
LOC110536579 LOC106593149 coding downstream 288257 9708802 ~ 9713188 (-)
LOC110534283 LOC106573819 coding downstream 312364 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 coding downstream 328057 9665862 ~ 9673439 (-)
LOC118945353 LOC106594169 coding downstream 344534 9654293 ~ 9656911 (-)
LOC110508724 prpf31 coding upstream 16372 10019313 ~ 10024005 (-)
LOC110520824 lmtk3 coding upstream 21507 10024448 ~ 10047484 (-)
LOC110508742 LOC106577219 coding upstream 44694 10047635 ~ 10053368 (-)
tmc4 LOC106577196 coding upstream 50594 10053535 ~ 10062470 (-)
mboat7 mboat7 coding upstream 60176 10063117 ~ 10072855 (-)
G223058 NA non-coding downstream 2069 9998968 ~ 9999376 (-)
G223047 NA non-coding downstream 2683 9973761 ~ 9998762 (-)
G223043 NA non-coding downstream 5969 9969605 ~ 9995476 (-)
G223052 NA non-coding downstream 14323 9980349 ~ 9987122 (-)
G222996 LOC106605728 non-coding downstream 87068 9913214 ~ 9914377 (-)
G223081 NA non-coding upstream 83911 10086852 ~ 10089362 (-)
LOC110520825 LOC106605761 non-coding upstream 96520 10099437 ~ 10128902 (-)
G223112 NA non-coding upstream 140368 10143309 ~ 10143823 (-)
G223115 NA non-coding upstream 150404 10153345 ~ 10153706 (-)
G222662 NA other downstream 378511 9617625 ~ 9622934 (-)
LOC110520821 LOC106574299 other downstream 438480 9559133 ~ 9594654 (-)
LOC110508584 LOC104949237 other downstream 450205 9528874 ~ 9551643 (-)
G223070 NA other upstream 10020 10012961 ~ 10014892 (-)
znf628 LOC106605829 other upstream 1068005 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 1169179 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 1272976 11275917 ~ 11278628 (-)

Expression


Co-expression Network