RNA id: TU254786



Basic Information


Item Value
RNA id TU254786
length 410
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC110508696
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10001415 ~ 10002941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAAACTACAAAGAGCAACATGGCTGGAATTGGAGCCTTCCTGAAGAATGCGTGGAATAAGGAGCCAGTGGTATTGGCCGCCTGCGCAATTGGACTTCTCGCTGTTACTGTTCCATTAGTGAGTCCCTTAACGAAGTACTCAGGCATGATGAATGCAGCTGTGCCATACAACTACCCAGtccctgTGCGAAACAATGGCAAGATGGGCGATGTCCCCAGCCACCCTTGTGACCCCAAAGGACCAAACCTGGACTGGATTAAAAGCCTGTAACCGTCCACATTCCCTTCCCTGTACAGACCACAGCCCGTTGttcttgtctctctgtgtctgcttcTCAGTAGATGGCCCTCAATAAAGATCATCTATTTAATACCACCAACTTTGCTCTTGGATTCTGTTGGGATGTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU254784 lncRNA downstream 2039 9998968 ~ 9999376 (-) True G223058
TU254771 lncRNA downstream 2653 9973761 ~ 9998762 (-) True G223047
TU254766 lncRNA downstream 5939 9969605 ~ 9995476 (-) True G223043
TU254776 lncRNA downstream 14293 9980349 ~ 9987122 (-) False G223052
TU254777 lncRNA downstream 14293 9980349 ~ 9987122 (-) True G223052
TU254795 lncRNA upstream 21565 10024459 ~ 10024856 (-) True LOC110520824
TU254817 lncRNA upstream 83958 10086852 ~ 10089362 (-) True G223081
TU254820 lncRNA upstream 96567 10099461 ~ 10105025 (-) True LOC110520825
TU254852 lncRNA upstream 140415 10143309 ~ 10143823 (-) True G223112
TU254855 lncRNA upstream 150451 10153345 ~ 10153706 (-) True G223115
XM_036968352.1 mRNA downstream 41383 9943081 ~ 9960032 (-) False LOC110508630
XM_036968360.1 mRNA downstream 41383 9943081 ~ 9960032 (-) True LOC110508630
XM_036968264.1 mRNA downstream 288227 9708802 ~ 9713188 (-) True LOC110536579
XM_036968235.1 mRNA downstream 312334 9679758 ~ 9689081 (-) False LOC110534283
XM_036968246.1 mRNA downstream 312334 9679758 ~ 9689081 (-) False LOC110534283
XM_036968375.1 mRNA upstream 16419 10019313 ~ 10024005 (-) False LOC110508724
XM_036968377.1 mRNA upstream 21554 10024448 ~ 10047484 (-) False LOC110520824
XM_036968378.1 mRNA upstream 21554 10024448 ~ 10047484 (-) False LOC110520824
XM_036968380.1 mRNA upstream 21554 10024448 ~ 10047484 (-) False LOC110520824
XM_021589511.2 mRNA upstream 44741 10047635 ~ 10053368 (-) False LOC110508742
TU254339 other downstream 318044 9679908 ~ 9683371 (-) False LOC110534283
TU254341 other downstream 318044 9679908 ~ 9683371 (-) False LOC110534283
TU254343 other downstream 318044 9679908 ~ 9683371 (-) False LOC110534283
TU254348 other downstream 318044 9679908 ~ 9683371 (-) True LOC110534283
TU254332 other downstream 327976 9672443 ~ 9673439 (-) True LOC118944443
TU254805 other upstream 10067 10012961 ~ 10014892 (-) True G223070
TU254793 other upstream 17754 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other upstream 17754 10020648 ~ 10023185 (-) True LOC110508724
TU255954 other upstream 1068052 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 1169226 11172120 ~ 11174367 (-) True G223942

Expression Profile