LOC110508742 (LOC106577219)


Basic Information

Item Value
gene id LOC110508742
gene name LOC106577219
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10047635 ~ 10053368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589511.2
atacaatTATATTTACACGTACCGGTTGTCCGTGCTGTTGGTCCTTTTGACAGTAGGAAGTGGAGAtaaaatatccacagtaaagTATTTTTTTACCTGACTTTTTGCGGCGACGGTAGATTCTGTCGCTTGTATTTTCAATCTCCCGAGACATTGTTGCACATTATGTAAACATTTGTCTACCGAAGCACGTTCCCTCGCAGTCCgctgggtataatttgtggaacgttccaacaggaatctgttacAAAAAGTTCGTAAATATCAAGGTTGCCAGCAAACAACGGATACAAAATTGTATAGTGGCAGAATAAAATACCGGGTAGGGAGTGGGCTATGTTTGTCCTCACTCTGGTAGCCTATggacaaacattaagaataaGCTACGTGCCCTGGTCAAAACAAACACTCGACTTCAGGAGAAAAATGAATATTCTACCTAAAAAGAGCTGGCATGTTCGCAACAAGGACAACGTCGCGCGCGTGCGCCGGGACGAGGCACAAGCCGCAGAGGAGGAGCGAGAGGTCCAACGCCGTGTGGAGCGAGCAGAGCAGGAGGCACGAACAGAGCACCTGAGACAGAAGTCACGAGCTGCACTTCAACAGTCTGGAGGATGGAAGGatgaaggaggggaggggagtggaggagtggtggaaCACATCAATCTATTTCCTCTGGAGGAGTCGTCTGAGAAGAAAGGAAACGCAGAGTACCTCAAAGACCAGAAAGATGAAAAGGAGCGTGAGGAGCGTGCTATTGGTCTGCTAGTGTCCCTAGGCCCCCAACCTGGGACAGAGGTAACTCCATGGTACATGAAAACAGGCCAGGAAGAAGAGAAAGGCgaagaaaaggagaaagagaaagacaacaaAGGAAAGAGACTGCCACTCAGtcaagaggagaaggagaagagagacagacgaCTGAAAGACATGCTGGACCCCTTGAAAGAGATGAAGAAAGCACTGGCGGTGAAGGATAGAAAAGaacataagaagaagaagaaggagaagagggatagaggggagaggagaagcagTGGTGGAGAAAGCTCTATTGAAAGGTTGCGAGCGGAGCGactgcagagagaggcagaggagaagaggagaacccAGGCTCTGCTGGACCAGAAGAATGGAACAGGGAAAGAGAAGGAGCGAccaagggagacagaggagagggaaatgCCGTACAACAGTGCTTATTTCCCAGAGCTGGCCCGCAAGAGGCAGAGGAAAGACCGCAATGCCTGGAGAGATGGCATCTTTTGAAGTCATACATCATGCAGTCTCATTGTTTGGGCAACGGACAGAGCACACTGAGGCATTCAATATACATTTATTAGTATGTGAAAGACGCCGAAGACTTCGACAAGGACTAGAGTGCCTGGAAGGTTATTCagttgtattgttgtgaaatgtgAGGCAGTGCTTTTAGCTTATTCTTGCAGTAACATGGAGGAGTTATGCATGTAGGCATATACTGTAGGTGTTGAACTAGTGAACATGTGTACAAATATAGCTCAAAATGCTACATTGTTTACTTATAACATCTAGGCTATCCTGAGTATCCTAAGCAGACTTATTGATGATTGTTGTCATTGTCATTATTTCTAATGAGGTAGAAAAAGAAAGGAAACCAATCAAGAGATTTGGGACAGCTGAGTGTAGTGTTGGAGTCTGTCTGGCACCCTGCTCAAGTGTGAGACAATACAGAGATCATTTTGCTCCACAACACAAGACCACTGTTCAAGTTGGAGTGTGTTGGATGTTTTACTATTGATGGCAACATTGTGTCAATTCAAGTCTGTCAAGTCTATTTTGTTTCTGATAATAGCATGTGCCAAtttaggaggtgtgtgtgtgtacatgcatctGTTCTATTTCACTATCTGATGTAGACAGAGTTTAGGGTGGTTGGCTCAACTATTATTGCACATTTTCCATTTCAATTAATTCAATAAAACTGTTAGGCCTGCCAAATAACAAAA
>XM_021589518.2
atacaatTATATTTACACGTACCGGTTGTCCGTGCTGTTGGTCCTTTTGACAGTAGGAAGTGGAGAtaaaatatccacagtaaagTATTTTTTTACCTGACTTTTTGCGGCGACGGTAGATTCTGTCGCTTGTATTTTCAATCTCCCGAGACATTGTTGCACATTATGTAAACATTTGTCTACCGAAGCACGTTCCCTCGCAGTCCgctgggtataatttgtggaacgttccaacaggaatctgttacAAAAAGTTCGTAAATATCAAGGTTGCCAGCAAACAACGGATACAAAATTGTATAGTGGCAGAATAAAATACCGGGTAGGGAGTGGGCTATGTTTGTCCTCACTCTGGTAGCCTATggacaaacattaagaataaGCTACGTGGTGAGTTGATGCCTATTCGCCAGCTAGTTAAATAGGTGAATTTATCATGTTAGTTTGTATACAACATTATACTTAAcgaagtttttggaacagattcctgttggaacgttccacaaattatacccacccatcAGCTAGAAGTGCTTGTGAAATTTGCCAGTTTATTGTGTGGGACAACGTTCGGTCTGTGATTCAGTTCAACTCGGCCGTTACTTACATATTGTGCACGTGTTTGTCATGTGAGAATTGTGTCAGTATTGAAAATACAAACGAATATACAGACCAGTTCAGTGTATTGAAAGTCAGGTTAACACTTCCCTGATGATATGTTGTTTGTTACTTCCCGACACAATCAGCGGACAACAGCCCTGGTCAAAACAAACACTCGACTTCAGGAGAAAAATGAATATTCTACCTAAAAAGAGCTGGCATGTTCGCAACAAGGACAACGTCGCGCGCGTGCGCCGGGACGAGGCACAAGCCGCAGAGGAGGAGCGAGAGGTCCAACGCCGTGTGGAGCGAGCAGAGCAGGAGGCACGAACAGAGCACCTGAGACAGAAGTCACGAGCTGCACTTCAACAGTCTGGAGGATGGAAGGatgaaggaggggaggggagtggaggagtggtggaaCACATCAATCTATTTCCTCTGGAGGAGTCGTCTGAGAAGAAAGGAAACGCAGAGTACCTCAAAGACCAGAAAGATGAAAAGGAGCGTGAGGAGCGTGCTATTGGTCTGCTAGTGTCCCTAGGCCCCCAACCTGGGACAGAGGTAACTCCATGGTACATGAAAACAGGCCAGGAAGAAGAGAAAGGCgaagaaaaggagaaagagaaagacaacaaAGGAAAGAGACTGCCACTCAGtcaagaggagaaggagaagagagacagacgaCTGAAAGACATGCTGGACCCCTTGAAAGAGATGAAGAAAGCACTGGCGGTGAAGGATAGAAAAGaacataagaagaagaagaaggagaagagggatagaggggagaggagaagcagTGGTGGAGAAAGCTCTATTGAAAGGTTGCGAGCGGAGCGactgcagagagaggcagaggagaagaggagaacccAGGCTCTGCTGGACCAGAAGAATGGAACAGGGAAAGAGAAGGAGCGAccaagggagacagaggagagggaaatgCCGTACAACAGTGCTTATTTCCCAGAGCTGGCCCGCAAGAGGCAGAGGAAAGACCGCAATGCCTGGAGAGATGGCATCTTTTGAAGTCATACATCATGCAGTCTCATTGTTTGGGCAACGGACAGAGCACACTGAGGCATTCAATATACATTTATTAGTATGTGAAAGACGCCGAAGACTTCGACAAGGACTAGAGTGCCTGGAAGGTTATTCagttgtattgttgtgaaatgtgAGGCAGTGCTTTTAGCTTATTCTTGCAGTAACATGGAGGAGTTATGCATGTAGGCATATACTGTAGGTGTTGAACTAGTGAACATGTGTACAAATATAGCTCAAAATGCTACATTGTTTACTTATAACATCTAGGCTATCCTGAGTATCCTAAGCAGACTTATTGATGATTGTTGTCATTGTCATTATTTCTAATGAGGTAGAAAAAGAAAGGAAACCAATCAAGAGATTTGGGACAGCTGAGTGTAGTGTTGGAGTCTGTCTGGCACCCTGCTCAAGTGTGAGACAATACAGAGATCATTTTGCTCCACAACACAAGACCACTGTTCAAGTTGGAGTGTGTTGGATGTTTTACTATTGATGGCAACATTGTGTCAATTCAAGTCTGTCAAGTCTATTTTGTTTCTGATAATAGCATGTGCCAAtttaggaggtgtgtgtgtgtacatgcatctGTTCTATTTCACTATCTGATGTAGACAGAGTTTAGGGTGGTTGGCTCAACTATTATTGCACATTTTCCATTTCAATTAATTCAATAAAACTGTTAGGCCTGCCAAATAACAAAA

Function

NR:

description
leukocyte receptor cluster member 1 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589511.2 False 1991 mRNA 0.45 5 10047635 10053368
XM_021589518.2 True 2357 mRNA 0.44 5 10047635 10053368

Neighbor

gene id symbol gene type direction distance location
LOC110520824 lmtk3 coding downstream 151 10024448 ~ 10047484 (-)
LOC110508724 prpf31 coding downstream 23630 10019313 ~ 10024005 (-)
LOC110508696 ndufa3 coding downstream 44694 10001415 ~ 10002941 (-)
LOC110508630 LOC106605751 coding downstream 87603 9943081 ~ 9960032 (-)
LOC110536579 LOC106593149 coding downstream 334447 9708802 ~ 9713188 (-)
tmc4 LOC106577196 coding upstream 167 10053535 ~ 10062470 (-)
mboat7 mboat7 coding upstream 9749 10063117 ~ 10072855 (-)
rps9 rps9 coding upstream 21357 10074725 ~ 10077392 (-)
LOC110520825 LOC106605761 coding upstream 46069 10099437 ~ 10128902 (-)
LOC110508790 grwd1 coding upstream 91165 10144533 ~ 10151145 (-)
G223058 NA non-coding downstream 48259 9998968 ~ 9999376 (-)
G223047 NA non-coding downstream 48873 9973761 ~ 9998762 (-)
G223043 NA non-coding downstream 52159 9969605 ~ 9995476 (-)
G223081 NA non-coding upstream 33484 10086852 ~ 10089362 (-)
G223112 NA non-coding upstream 89941 10143309 ~ 10143823 (-)
G223115 NA non-coding upstream 99977 10153345 ~ 10153706 (-)
G223148 NA non-coding upstream 164093 10217461 ~ 10219349 (-)
G223070 NA other downstream 32743 10012961 ~ 10014892 (-)
LOC110534283 LOC106573819 other downstream 364264 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 374196 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 1017578 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 1118752 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 1222549 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1673994 11727284 ~ 11741584 (-)
G224869 NA other upstream 1699483 11752851 ~ 11753680 (-)

Expression


Co-expression Network