LOC110509576 (LOC106576947)


Basic Information

Item Value
gene id LOC110509576
gene name LOC106576947
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11727284 ~ 11741584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590547.2
GTAGTAGGATAAATACTTATGTAACTCGATTGAGCAATAGCAGACTGTGCGCCTATGGGTCACAAGAGACATTTCTCAAGTGTATACAAAAACAACAATTGAAACACCTGCACGGTGCCTGGGGGGTTGTTTCTAAATCCGGATGTAGCATAATGCTAAAAATGCCTATTGCCTATTGGAGCAACAGATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctctcttgtccaATCCCTCACGTGCGACAATAAAACACAGTATGCTTGGCCACTGCATGACAGCCAATGGTGCTGCAACAAGTGTCCACCAGGTCAGCATCTGGTGGGACGCTGCACCGGTCAGAACAGCCCTACCCAGTGTGCTGACTGCGCCAGCGGCTACTACTCAGACAGCTACAACTTCAACATAGGCTGCAAATCCTGCGATGGCTGCAGCAtgagtgAGCTGCAGTATGTATCTAACTGTTCCACCAAGCAGAATGATGTGTGCAGCTGTAAACCAGGCTACCGCTGCAGAGGAAGTGGCACCTGTCTGGACTGTGAGGAGATCCCCAGCCCGAACACACCCAAACTCATACCGACACCTCCCATCATGCCAGCTACAGTGTCAAACCACTCGGTGCCTGGTATCCCTAATCATAGACCTAAACCTGTCACCAAACCTGGTACTGGGCCCAGAACAAATCCAAACCAAGatgatAGCAAGTGGCTcccggtgtgtgtgtctgcagtgtgtgtgtgtctactgctCACCTGCCTTGTTGCCATCTCAAAGCTCAAACCTTTTCTGCGATGGATTGGTTCACCAAACAGCTTCTGGTCTCCTAAAAAGACTACTCCAGCGAATCAGAGCACAGCGGAAGAGGAAGTGCCCATGCCGGTCCAGGAAGTGTGTGGAAAGCCAGAGCTGCTACTGGACGTATGATGGAGGAAGTGGGTGTCGAAGGAGAGGATGAGAACTCCCAAGCGAGCTGGGAGACCCGGGAGACAAACAGACTACCTCACATTCCCATTGAAGTGAAACTAACCTGAAGGCTAGACAGGCTGCTGTATTGGTTTAACGCAGTGGCTTCTGTATCTAGGACTTTCAGAAAGGACAAGAAAATAGGACAAAAAGACACTTTGAAGTATGAAGATACAGGCtaaagatgagagagggagtgggagtctGTGACCGAGAAAGAGCAGAATGAGAGTGAGAAACGAAGAGTGaacaagagacacagagagacagacacacacgcacacacacacacacacgcacatttgtGTGCTgaatacatgtactgtacatgtttataTTGAAGATGTTTTACACCTTCATTATGATTTTAGCTGTATCTATGCTTTATGCCAGTGTTTACTCTTACATAGTAGTGGCTGTTTAAAACATACAGTGCTGTATTTTAAATAAAGAACAGAATCACAAATGTTACAGGCCTACTGTAATGTCAGACAA
>XM_036969073.1
TTAGTAAAAGTTTAAGAAATACATTCCAATCTCCCAAGAGAAGCCAGGGTGTTAAGTCGCGAGTTCTAGAGAGGGGGCGGACTCAAACGGGAAAATGGACACGTCATGCTCATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctctcttgtccaATCCCTCACGTGCGACAATAAAACACAGTATGCTTGGCCACTGCATGACAGCCAATGGTGCTGCAACAAGTGTCCACCAGGTCAGCATCTGGTGGGACGCTGCACCGGTCAGAACAGCCCTACCCAGTGTGCTGACTGCGCCAGCGGCTACTACTCAGACAGCTACAACTTCAACATAGGCTGCAAATCCTGCGATGGCTGCAGCAtgagtgAGCTGCAGTATGTATCTAACTGTTCCACCAAGCAGAATGATGTGTGCAGCTGTAAACCAGGCTACCGCTGCAGAGGAAGTGGCACCTGTCTGGACTGTGAGGAGATCCCCAGCCCGAACACACCCAAACTCATACCGACACCTCCCATCATGCCAGCTACAGTGTCAAACCACTCGGTGCCTGGTATCCCTAATCATAGACCTAAACCTGTCACCAAACCTGGTACTGGGCCCAGAACAAATCCAAACCAAGatgatAGCAAGTGGCTcccggtgtgtgtgtctgcagtgtgtgtgtgtctactgctCACCTGCCTTGTTGCCATCTCAAAGCTCAAACCTTTTCTGCGATGGATTGGTTCACCAAACAGCTTCTGGTCTCCTAAAAAGACTACTCCAGCGAATCAGAGCACAGCGGAAGAGGAAGTGCCCATGCCGGTCCAGGAAGTGTGTGGAAAGCCAGAGCTGCTACTGGACGTATGATGGAGGAAGTGGGTGTCGAAGGAGAGGATGAGAACTCCCAAGCGAGCTGGGAGACCCGGGAGACAAACAGACTACCTCACATTCCCATTGAAGTGAAACTAACCTGAAGGCTAGACAGGCTGCTGTATTGGTTTAACGCAGTGGCTTCTGTATCTAGGACTTTCAGAAAGGACAAGAAAATAGGACAAAAAGACACTTTGAAGTATGAAGATACAGGCtaaagatgagagagggagtgggagtctGTGACCGAGAAAGAGCAGAATGAGAGTGAGAAACGAAGAGTGaacaagagacacagagagacagacacacacgcacacacacacacacacgcacatttgtGTGCTgaatacatgtactgtacatgtttataTTGAAGATGTTTTACACCTTCATTATGATTTTAGCTGTATCTATGCTTTATGCCAGTGTTTACTCTTACATAGTAGTGGCTGTTTAAAACATACAGTGCTGTATTTTAAATAAAGAACAGAATCACAAATGTTACAGGCCTACTGTAATGTCAGACAA
>XM_036969079.1
CTCCAAAATTAAAATATATGTTTAGTAAAAGTTTAAGAAATACATTCCAATCTCCCAAGAGAAGCCAGGGTGTTAAGTCGCGAGTTCTAGAGAGGGGGCGGACTCAAACGGGAAAATGGACACGTCATGCTCAAATCTGTGTATGCTGTATGAATAGTGAATGCTCAGAGGCCTGAGGCGAAGGTGGAGGGAGATGTGTAGAGGGTCATCCCTGCCGCTGCTCCCTGGGCTGTAACAGTTCACCCAGGGTCATGTGATGTGGCTTGGCTTCTGTGAAAATCCAGGTTGAGCTGAGAAGGAGCAGACCAGAGTCAATGAAACCACGTGACCTCTGACAGAGAGACGGCTGCATAtggttgaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacacaggtgCAGACACATTCACCcgatgcacacacgcacacacacacacacactaaccatgATAGGCAAAATATGACATTCAGTTAACCCACAAGAGTCAATGTAGCTCAAAAACCTGTTGTGTACAAGTCCGTAAAGAATGTCAATGTCATTTCTCTCAGTCTGATCTGAGTATGTTTGACTGGACGGTGAATTTAAATAAGAACGGCTGCTGCTTACAGTGAAGAAAATGACTGGTCCTAAGATGAGTGTAATGTAGTCATATCACTCTGAAGTTACCTTGTCATCAAAGcaactgagcgagagagagagagacagacggacataAGAGAGTCTTAAAGATTGTTTTGGAACCTAATATCACCGTTTTTTAtgaaaaaagagagacagacaaatagCGGTGgaaagaaagggggaggaagATGGGCAAGTTTAGGGTTTTAAGCGGCACAGTGGTTCAGAGTGAACTAGGGGGGtcgtcatagagagagagataggaatcTTGAAATGGCAGTTTACCTTATGACTCATCTTTTGAATAATACTCTGACACACTGTGATCCCCAGTTCAGTCACACAGTCAGAGGGTCCAGAGTCACATCTATCtcattctctcatcctctctgagACACGATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctctcttgtccaATCCCTCACGTGCGACAATAAAACACAGTATGCTTGGCCACTGCATGACAGCCAATGGTGCTGCAACAAGTGTCCACCAGGTCAGCATCTGGTGGGACGCTGCACCGGTCAGAACAGCCCTACCCAGTGTGCTGACTGCGCCAGCGGCTACTACTCAGACAGCTACAACTTCAACATAGGCTGCAAATCCTGCGATGGCTGCAGCAtgagtgAGCTGCAGTATGTATCTAACTGTTCCACCAAGCAGAATGATGTGTGCAGCTGTAAACCAGGCTACCGCTGCAGAGGAAGTGGCACCTGTCTGGACTGTGAGGAGATCCCCAGCCCGAACACACCCAAACTCATACCGACACCTCCCATCATGCCAGCTACAGTGTCAAACCACTCGGTGCCTGGTATCCCTAATCATAGACCTAAACCTGTCACCAAACCTGGTACTGGGCCCAGAACAAATCCAAACCAAGatgatAGCAAGTGGCTcccggtgtgtgtgtctgcagtgtgtgtgtgtctactgctCACCTGCCTTGTTGCCATCTCAAAGCTCAAACCTTTTCTGCGATGGATTGGTTCACCAAACAGCTTCTGGTCTCCTAAAAAGACTACTCCAGCGAATCAGAGCACAGCGGAAGAGGAAGTGCCCATGCCGGTCCAGGAAGTGTGTGGAAAGCCAGAGCTGCTACTGGACGTATGATGGAGGAAGTGGGTGTCGAAGGAGAGGATGAGAACTCCCAAGCGAGCTGGGAGACCCGGGAGACAAACAGACTACCTCACATTCCCATTGAAGTGAAACTAACCTGAAGGCTAGACAGGCTGCTGTATTGGTTTAACGCAGTGGCTTCTGTATCTAGGACTTTCAGAAAGGACAAGAAAATAGGACAAAAAGACACTTTGAAGTATGAAGATACAGGCtaaagatgagagagggagtgggagtctGTGACCGAGAAAGAGCAGAATGAGAGTGAGAAACGAAGAGTGaacaagagacacagagagacagacacacacgcacacacacacacacacgcacatttgtGTGCTgaatacatgtactgtacatgtttataTTGAAGATGTTTTACACCTTCATTATGATTTTAGCTGTATCTATGCTTTATGCCAGTGTTTACTCTTACATAGTAGTGGCTGTTTAAAACATACAGTGCTGTATTTTAAATAAAGAACAGAATCACAAATGTTACAGGCCTACTGTAATGTCAGACAA
>XM_036969085.1
CTCCAAAATTAAAATATATGTTTAGTAAAAGTTTAAGAAATACATTCCAATCTCCCAAGAGAAGCCAGGGTGTTAAGTCGCGAGTTCTAGAGAGGGGGCGGACTCAAACGGGAAAATGGACACGTCATGCTCAAATCTGTGTATGCTGTATGAATAGTGAATGCTCAGAGGCCTGAGGCGAAGGTGGAGGGAGATGTGTAGAGGGTCATCCCTGCCGCTGCTCCCTGGGCTGTAACAGTTCACCCAGGGTCATGTGATGTGGCTTGGCTTCTGTGAAAATCCAGGTTGAGCTGAGAAGGAGCAGACCAGAGTCAATGAAACCACGTGACCTCTGACAGAGAGACGGCTGCATAtgTTCAGTCACACAGTCAGAGGGTCCAGAGTCACATCTATCtcattctctcatcctctctgagACACGATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctctcttgtccaATCCCTCACGTGCGACAATAAAACACAGTATGCTTGGCCACTGCATGACAGCCAATGGTGCTGCAACAAGTGTCCACCAGGTCAGCATCTGGTGGGACGCTGCACCGGTCAGAACAGCCCTACCCAGTGTGCTGACTGCGCCAGCGGCTACTACTCAGACAGCTACAACTTCAACATAGGCTGCAAATCCTGCGATGGCTGCAGCAtgagtgAGCTGCAGTATGTATCTAACTGTTCCACCAAGCAGAATGATGTGTGCAGCTGTAAACCAGGCTACCGCTGCAGAGGAAGTGGCACCTGTCTGGACTGTGAGGAGATCCCCAGCCCGAACACACCCAAACTCATACCGACACCTCCCATCATGCCAGCTACAGTGTCAAACCACTCGGTGCCTGGTATCCCTAATCATAGACCTAAACCTGTCACCAAACCTGGTACTGGGCCCAGAACAAATCCAAACCAAGatgatAGCAAGTGGCTcccggtgtgtgtgtctgcagtgtgtgtgtgtctactgctCACCTGCCTTGTTGCCATCTCAAAGCTCAAACCTTTTCTGCGATGGATTGGTTCACCAAACAGCTTCTGGTCTCCTAAAAAGACTACTCCAGCGAATCAGAGCACAGCGGAAGAGGAAGTGCCCATGCCGGTCCAGGAAGTGTGTGGAAAGCCAGAGCTGCTACTGGACGTATGATGGAGGAAGTGGGTGTCGAAGGAGAGGATGAGAACTCCCAAGCGAGCTGGGAGACCCGGGAGACAAACAGACTACCTCACATTCCCATTGAAGTGAAACTAACCTGAAGGCTAGACAGGCTGCTGTATTGGTTTAACGCAGTGGCTTCTGTATCTAGGACTTTCAGAAAGGACAAGAAAATAGGACAAAAAGACACTTTGAAGTATGAAGATACAGGCtaaagatgagagagggagtgggagtctGTGACCGAGAAAGAGCAGAATGAGAGTGAGAAACGAAGAGTGaacaagagacacagagagacagacacacacgcacacacacacacacacgcacatttgtGTGCTgaatacatgtactgtacatgtttataTTGAAGATGTTTTACACCTTCATTATGATTTTAGCTGTATCTATGCTTTATGCCAGTGTTTACTCTTACATAGTAGTGGCTGTTTAAAACATACAGTGCTGTATTTTAAATAAAGAACAGAATCACAAATGTTACAGGCCTACTGTAATGTCAGACAA
>TU257101
CCAAGTTTAGCTGGAATTTAGCCCCGAAAATATTTGGATAATGTGATTGGTTGGCGATATGACATTGGCCTACGTTTCTTCTTGCGCTGCGCAGAATATCAGATCTCAACAACATTGGAGAAGTGTTAAAAAcgtcaatcagcagttgaaacaataagaaATCATAAACAagttgagggatggggctggagaaacgtaactactctcaaattcatgGACAGAGctatgcaaggactgaccatccatgatatcaaaattatagttttaaccatgttttgagactatacaatgtttgtttagatttactttgtttacaaacattggagtaaaacaagcttatattttgggttctgatggggtacgacagttgaactacaCTCATGGGGCATTTCTAGTTACAGTATATTCTTCAAAAATCactgggtacatatcattaattaaGCTACTGTTGACTTCCCCTTTAACATCACCAGCACCACATCCTTaagatataaactcagcaaaaaaagaaacatccctttttcaggaccctgtctttcaaagataagtCGTAAAAATcccaataacttcacagatcttcattgtaaagggtttaaacaccgtttcccatgctcAATGTTCAATGAAcgataaacaattaatgaacatgcacttgtggaacggcttacagacagtaggcaattaaggtcatagttatgaaaactttctactgactctgaaaaacaccaaaagaaagatgcccagggtccctgctcatctgcgtgaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggtcagggcaataaattgcaatgtccgtacggCGAGaccctaagacagcgctacagggagacaggacggacagctgatcgtcctcgcagtggcagaccacagtGGCAgacctcgcagtggcagaccacatgtaacaacacctgcacacaatcggtacatccaaacatcacacctgtgggacagttACAGGATGgaaactgcccaagttacaccaggaacacacaatccctccatcaatgctcagactgtccgcaatagactgagagaggctggactgagggcttgtaggcatgttgtaaggcaggtcctcaccagacatcaccggcaacaacgtcacctatgggcacaaacccaccgtcgctggaccagacaggactgacaaaagtgctcttcattgacgagtcgcggtcaatcatggtctggggcggtgtgtcacagcatcatcggactgagattgagattgcCTTCATGGCACTTTCGACAGCATGTCCCGTTAGCAGTGCGGTAATGACTCCCCTCAAGGCATTGCAACTCCCGGGTCCTATCAGGAGGTGGTGGTGCCGAGAGGGAGGGGTCTACTGACCAGCACAATACGAGCAGAGCGCAAACGTTCAGAATGCATTTTTCCTTCCATTTCCCTCTCAAGACGTCCATTCTTTCACACCACTCTTCTCACTAACACCATCTTTAAAAGAACAACACCTTGATCAAACCCGCTCCTACATGACAAATAGTGATGCAGTCGAGTCTCCAAAATTAAAATATATGTTTAGTAAAAGTTTAAGAAATACATTCCAATCTCCCAAGAGAAGCCAGGGTGTTAAGTCGCGAGTTCTAGAGAGGGGGCGGACTCAAACGGGAAAATGGACACGTCATGCTCATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctctcttgtccaATCCCTCACGTGCGACAATAAAACACAGTATGCTTGGCCACTGCATGACAGCCAATGGTGCTGCAACAAGTGTCCACCAGGTCAGCATCTGGTGGGACGCTGCACCGGTCAGAACAGCCCTACCCAGTGTGCTGACTGCGCCAGCGGCTACTACTCAGACAGCTACAACTTCAACATAGGCTGCAAATCCTGCGATGGCTGCAGCAtgagtgAATGATGTGTGCAGCTGTAAACCAGGCTACCGCTGCAGAGGAAGTGGCACCTGTCTGGACTGTGAGGAGATCCCCAGCCCGAACACACCCAAACTCATACCGACACCTCCCATCATGCCAGCTACAGTGTCAAACCACTCGGTGCCTGGTATCCCTAATCATAGACCTAAACCTGTCACCAAACCTGGTACTGGGCCCAGAACAAATCCAAACCAAGatgatAGCAAGTGGCTcccggtgtgtgtgtctgcagtgtgtgtgtgtctactgctCACCTGCCTTGTTGCCATCTCAAAGCTCAAACCTTTTCTGCGATGGATTGGTTCACCAAACAGCTTCTGGTCTCCTAAAAAGACTACTCCAGCGAATCAGAGCACAGCGGAAGAGGAAGTGCCCATGCCGGTCCAGGAAGTGTGTGGAAAGCCAGAGCTGCTACTGGACGTATGATGGAGGAAGTGGGTGTCGAAGGAGAGGATGAGAACTCCCAAGCGAGCTGGGAGACCCGGGAGACAAACAGACTACCTCACATTCCCATTGAAGTGAAACTAACCTGAAGGCTAGACAGGCTGCTGTATTGGTTTAACGCAGTGGCTTCTGTATCTAGGACTTTCAGAAAGGACAAGAAAATAGGACAAAAAGACACTTTGAAGTATGAAGATACAGGCtaaagatgagagagggagtgggagtctGTGACCGAGAAAGAGCAGAATGAGAGTGAGAAACGAAGAGTGaacaagagacacagagagacagacacacacgcacacacacacacacacgcacatttgtGTGCTgaatacatgtactgtacatgtttataTTGAAGATGTTTTACACCTTCATTATGATTTTAGCTGTATCTATGCTTTATGCCAGTGTTTACTCTTACATAGTAGTGGC

Function

NR:

description
CD27 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590547.2 False 1480 mRNA 0.47 6 11727284 11737850
XM_036969073.1 False 1404 mRNA 0.48 6 11727284 11738035
XM_036969079.1 False 2356 mRNA 0.47 7 11727284 11738056
XM_036969085.1 False 1714 mRNA 0.48 8 11727284 11738056
TU257101 True 2870 TUCP 0.51 9 11727362 11741584

Neighbor

gene id symbol gene type direction distance location
LOC110509335 NA coding downstream 112446 11613213 ~ 11614838 (-)
fam131bb fam131b coding downstream 178543 11503867 ~ 11548741 (-)
LOC110509245 LOC106576972 coding downstream 272918 11449258 ~ 11454366 (-)
LOC110509171 LOC100196661 coding downstream 290656 11433118 ~ 11436628 (-)
styk1b LOC106576787 coding downstream 294295 11424793 ~ 11432989 (-)
LOC110509520 lag-3 coding upstream 37999 11776055 ~ 11779268 (-)
LOC110509592 LOC100136300 coding upstream 70057 11808113 ~ 11811663 (-)
c1r c1r/c1s coding upstream 81557 11819613 ~ 11825101 (-)
LOC110509614 ret1 coding upstream 120662 11858718 ~ 11862407 (-)
LOC110509511 ptn6 coding upstream 124933 11862989 ~ 11895102 (-)
G224836 NA non-coding downstream 19036 11706135 ~ 11708248 (-)
G224838 NA non-coding downstream 23144 11702921 ~ 11704140 (-)
G224852 NA non-coding downstream 24579 11701895 ~ 11702705 (-)
G224850 NA non-coding downstream 31424 11695615 ~ 11695860 (-)
G224848 NA non-coding downstream 33569 11693480 ~ 11693715 (-)
G224867 NA non-coding upstream 11997 11750053 ~ 11750752 (-)
G224868 NA non-coding upstream 14362 11752418 ~ 11752790 (-)
G224869 NA non-coding upstream 14795 11752851 ~ 11753680 (-)
G224874 NA non-coding upstream 43354 11781410 ~ 11781727 (-)
G224870 NA non-coding upstream 68081 11806137 ~ 11808096 (-)
G223969 LOC106605840 other downstream 448656 11275917 ~ 11278628 (-)
G223942 LOC106576860 other downstream 552917 11172120 ~ 11174367 (-)
znf628 LOC106605829 other downstream 653534 11068525 ~ 11079570 (-)
LOC110508724 prpf31 other downstream 1704081 10019313 ~ 10024005 (-)
G223070 NA other downstream 1712392 10012961 ~ 10014892 (-)
G224873 NA other upstream 57834 11795890 ~ 11796309 (-)
G224954 LOC106576536 other upstream 276870 12014926 ~ 12016101 (-)
G224988 LOC106605856 other upstream 333231 12071287 ~ 12081233 (-)

Expression


Co-expression Network