LOC110509511 (ptn6)


Basic Information

Item Value
gene id LOC110509511
gene name ptn6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11862989 ~ 11895102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590419.2
GAAGGAGCGAGAGAGTGTCACAGAacgacagagagaaaaagaaaaaagaagggagggacggagggtaAGACATACACGAGCCTGTCAGCAAGAGTGTCGCTTGTTTTCAGAAGGAGCTGAGAACAGCCCAGAAGAAGTGAAGGTGAAAATGGTTCGCTGGTTCCACAGGGATATCTCTGGCTTGGATGCTGAGTCTGTTTTGAAGAGCCGGGGCGTCCATGGCAGCTTCCTGGCCCGACCCAGCAGGAAGAACCAgggagacttctctctctctgtcagGGTGGGTGAGCTGGTGACCCACATCCGTATCCAAAACACAGGGGACTTCTACGACCTGTATGGAGGGGAGAAGTTTGCCACGCTGTCCGAGCTGGTGGAGTACTACACTGCAGAGAATGGGATCCTGCAGGACAAAGACGGCACCATCATCGAGCTCAAATACCCCTTCAACTGCTCTGACCCCACCACCGAGAGGTGGTATCACGGACACCTGTCAGGCCCCAACGCAGAGAAGTTGCTATGGGAACGGGACGAGCCGGGCACCTTCCTGGTGCGGGAGTCTCTGTCCAAACCTGGAGActttgttctgtctgttctgaCTGAGGAGAAGAGCAAGGCATCCAGCGGAGGGAGGAGGGTCTCACACATCAAGATCAtgtgccagaaTGACCGGTACACGGTGGGAGGCACAGAGATGTTTGACACCCTGGCTGACCTGATGGAGCACTACAAACGCAAAGGCATCGAGGAGATGTCTGGAACCTGGGTGCACCTCAAACAGccctACTTCTCCACCAGAGTGAATGCAGCAGACATTGACAGCAGAGTGAGGCTGCTGGACCAGATGgccgagagagagaacgagggagacaAGAAGAGCAAAGCAGGATTCTGGGAGGAGTTTGATacCCTTCAAAAGCAGGAGACAAAGGTGAAGAAGAGCAGAGAAGAAGGGATGAGACCAGAAAACAAAAGCAAAAACCGATATAAGAACATCCTTCCCTTTGATGAGACCAGGGTCATTCTGTCATCTGGAGACCCCGATATCATTGGCTCAGATTACATCAATGGCAACTATGTGACAAATAAGTTACAAGAGTCCGGTGACCCGAAGGTGTACATTGCCTGTCAGGGCTGCCTTGCAACAACTGTCAATGATTTCTGGCAGATGGTGTGGCAAGAGAGGACAAGGGTCATCGTCATGACAACCAGGGAGGTCGAGAAGGGACGGAATAAATGCGTGCCATACTGGCCAGAAATGCAGGGTTCCAAAGAGGTGGGGCCGTATGTGGTCACTTGTGTCTCTGAGAGAGATGCCACTGACTACAAGATCAGGGTTATGGAGATCTCCCCTCTGGATCAGTCGGATTCGGTCCGTACTATCTGGCACTACCAGTACCTGAGCTGGCCCGACCATGGAGTTCCCGAGGAGCCAGGAGGGGTGCTCAGCTTCCTCACTCAGGTCAACACAAAACAGGCCGAGTTCGCCAACGCCGGGCCAATGATCATCCACTGCAGTGCTGGAATAGGCCGAACTGGCACCATTGTGGTGATCGACATGATCATCCAGACCATCGACACGAAAGGTCTGGACTGTGACATAGACATCCAGAAGAGCATCCAGATGGTGAGAGACCAGCGGTCAGGCATGGTGCAGACTGAAGCCCAGTACAAGTTCATCTACCTGGCCGTCTCTGAGTACATAGAGGCCTCCAAGACCTACAACaagGGAGCTGAGACAGAGTATGGAAATTTGCAGTTCAAACACCAGCCTGCCAGCCGCAAGGTCTCCAAAAACAAGGAACAGGAATTGTATGAAAACCTAGCCAAAGGAAAGAAAGATGTGAAGAAGCAGAAGTCAGAGGAGAAGAAGAGTGGCTCCGTGAGAAAaagatagaggatgagagagctgTGTCCTGATGATTTAATATTGAATTTGATATCaactttttattttaaaatatgtATTTGAGTGTTTTTTGATATCAAGCGATAAAGTTGATGTCTGTGATATAATGAAGATTATAAAGCAAAGTACTGATAGATTTGGGCCCTGGGCCGTGAACCATGGAACCATTCTGCACCCATGCAAATGGTAATGTATTGACATTTTTGCTGACAATAAAGGCTCAGAGTAATATGCA
>XM_036969153.1
GACAGGTGGGttagaaggaaagagagagagaatgagaagaacAGAGAAAAATGTATGATTAGTTTAACCAGTATATACTGGAGGGGCTAGTTTGTTTTTCATTCCTGATAGTGATGAGCCACAAAAAGGAAGGAAGGAGCGAGAGAGTGTCACAGAacgacagagagaaaaagaaaaaagaagggagggacggaggGCCCAGAAGAAGTGAAGGTGAAAATGGTTCGCTGGTTCCACAGGGATATCTCTGGCTTGGATGCTGAGTCTGTTTTGAAGAGCCGGGGCGTCCATGGCAGCTTCCTGGCCCGACCCAGCAGGAAGAACCAgggagacttctctctctctgtcagGGTGGGTGAGCTGGTGACCCACATCCGTATCCAAAACACAGGGGACTTCTACGACCTGTATGGAGGGGAGAAGTTTGCCACGCTGTCCGAGCTGGTGGAGTACTACACTGCAGAGAATGGGATCCTGCAGGACAAAGACGGCACCATCATCGAGCTCAAATACCCCTTCAACTGCTCTGACCCCACCACCGAGAGGTGGTATCACGGACACCTGTCAGGCCCCAACGCAGAGAAGTTGCTATGGGAACGGGACGAGCCGGGCACCTTCCTGGTGCGGGAGTCTCTGTCCAAACCTGGAGActttgttctgtctgttctgaCTGAGGAGAAGAGCAAGGCATCCAGCGGAGGGAGGAGGGTCTCACACATCAAGATCAtgtgccagaaTGACCGGTACACGGTGGGAGGCACAGAGATGTTTGACACCCTGGCTGACCTGATGGAGCACTACAAACGCAAAGGCATCGAGGAGATGTCTGGAACCTGGGTGCACCTCAAACAGccctACTTCTCCACCAGAGTGAATGCAGCAGACATTGACAGCAGAGTGAGGCTGCTGGACCAGATGgccgagagagagaacgagggagacaAGAAGAGCAAAGCAGGATTCTGGGAGGAGTTTGATacCCTTCAAAAGCAGGAGACAAAGGTGAAGAAGAGCAGAGAAGAAGGGATGAGACCAGAAAACAAAAGCAAAAACCGATATAAGAACATCCTTCCCTTTGATGAGACCAGGGTCATTCTGTCATCTGGAGACCCCGATATCATTGGCTCAGATTACATCAATGGCAACTATGTGACAAATAAGTTACAAGAGTCCGGTGACCCGAAGGTGTACATTGCCTGTCAGGGCTGCCTTGCAACAACTGTCAATGATTTCTGGCAGATGGTGTGGCAAGAGAGGACAAGGGTCATCGTCATGACAACCAGGGAGGTCGAGAAGGGACGGAATAAATGCGTGCCATACTGGCCAGAAATGCAGGGTTCCAAAGAGGTGGGGCCGTATGTGGTCACTTGTGTCTCTGAGAGAGATGCCACTGACTACAAGATCAGGGTTATGGAGATCTCCCCTCTGGATCAGTCGGATTCGGTCCGTACTATCTGGCACTACCAGTACCTGAGCTGGCCCGACCATGGAGTTCCCGAGGAGCCAGGAGGGGTGCTCAGCTTCCTCACTCAGGTCAACACAAAACAGGCCGAGTTCGCCAACGCCGGGCCAATGATCATCCACTGCAGTGCTGGAATAGGCCGAACTGGCACCATTGTGGTGATCGACATGATCATCCAGACCATCGACACGAAAGGTCTGGACTGTGACATAGACATCCAGAAGAGCATCCAGATGGTGAGAGACCAGCGGTCAGGCATGGTGCAGACTGAAGCCCAGTACAAGTTCATCTACCTGGCCGTCTCTGAGTACATAGAGGCCTCCAAGACCTACAACaagGGAGCTGAGACAGAGTATGGAAATTTGCAGTTCAAACACCAGCCTGCCAGCCGCAAGGTCTCCAAAAACAAGGAACAGGAATTGTATGAAAACCTAGCCAAAGGAAAGAAAGATGTGAAGAAGCAGAAGTCAGAGGAGAAGAAGAGTGGCTCCGTGAGAAAaagatagaggatgagagagctgTGTCCTGATGATTTAATATTGAATTTGATATCaactttttattttaaaatatgtATTTGAGTGTTTTTTGATATCAAGCGATAAAGTTGATGTCTGTGATATAATGAAGATTATAAAGCAAAGTACTGATAGATTTGGGCCCTGGGCCGTGAACCATGGAACCATTCTGCACCCATGCAAATGGTAATGTATTGACATTTTTGCTGACAATAAAGGCTCAGAGTAATATGCA
>XM_021590425.2
cagacagagagaggtgcaATTAAGAAAGTTGGGGGAAATTACAGGGCAGGAGAAAATACTGCGTTGTAATAGAGCCTGCTGATAACTTAACAGGACAGAGACCGGgacggagggatagagagaaggcaGTCAGAGGAATTGTAGAGAGGGGGAACaacagggagagacggggaggaaaTGAGTGAGAAAgaagaggtagatagagggacagaagagagaaGCAGCTGGAACAGTGTAGTATACGCTAGTTAACTGGACACAGTGGACAGACCACACTGCACTAACCTCTAGCTCATCTTCGTTCTGTTGTAAAGACTGGATCTATGAGACTGAACTGCTGTCTAGAACACCTGAGCAAAAGTCCATTCAATGTCTTGTGGGCCCAGAAGAAGTGAAGGTGAAAATGGTTCGCTGGTTCCACAGGGATATCTCTGGCTTGGATGCTGAGTCTGTTTTGAAGAGCCGGGGCGTCCATGGCAGCTTCCTGGCCCGACCCAGCAGGAAGAACCAgggagacttctctctctctgtcagGGTGGGTGAGCTGGTGACCCACATCCGTATCCAAAACACAGGGGACTTCTACGACCTGTATGGAGGGGAGAAGTTTGCCACGCTGTCCGAGCTGGTGGAGTACTACACTGCAGAGAATGGGATCCTGCAGGACAAAGACGGCACCATCATCGAGCTCAAATACCCCTTCAACTGCTCTGACCCCACCACCGAGAGGTGGTATCACGGACACCTGTCAGGCCCCAACGCAGAGAAGTTGCTATGGGAACGGGACGAGCCGGGCACCTTCCTGGTGCGGGAGTCTCTGTCCAAACCTGGAGActttgttctgtctgttctgaCTGAGGAGAAGAGCAAGGCATCCAGCGGAGGGAGGAGGGTCTCACACATCAAGATCAtgtgccagaaTGACCGGTACACGGTGGGAGGCACAGAGATGTTTGACACCCTGGCTGACCTGATGGAGCACTACAAACGCAAAGGCATCGAGGAGATGTCTGGAACCTGGGTGCACCTCAAACAGccctACTTCTCCACCAGAGTGAATGCAGCAGACATTGACAGCAGAGTGAGGCTGCTGGACCAGATGgccgagagagagaacgagggagacaAGAAGAGCAAAGCAGGATTCTGGGAGGAGTTTGATacCCTTCAAAAGCAGGAGACAAAGGTGAAGAAGAGCAGAGAAGAAGGGATGAGACCAGAAAACAAAAGCAAAAACCGATATAAGAACATCCTTCCCTTTGATGAGACCAGGGTCATTCTGTCATCTGGAGACCCCGATATCATTGGCTCAGATTACATCAATGGCAACTATGTGACAAATAAGTTACAAGAGTCCGGTGACCCGAAGGTGTACATTGCCTGTCAGGGCTGCCTTGCAACAACTGTCAATGATTTCTGGCAGATGGTGTGGCAAGAGAGGACAAGGGTCATCGTCATGACAACCAGGGAGGTCGAGAAGGGACGGAATAAATGCGTGCCATACTGGCCAGAAATGCAGGGTTCCAAAGAGGTGGGGCCGTATGTGGTCACTTGTGTCTCTGAGAGAGATGCCACTGACTACAAGATCAGGGTTATGGAGATCTCCCCTCTGGATCAGTCGGATTCGGTCCGTACTATCTGGCACTACCAGTACCTGAGCTGGCCCGACCATGGAGTTCCCGAGGAGCCAGGAGGGGTGCTCAGCTTCCTCACTCAGGTCAACACAAAACAGGCCGAGTTCGCCAACGCCGGGCCAATGATCATCCACTGCAGTGCTGGAATAGGCCGAACTGGCACCATTGTGGTGATCGACATGATCATCCAGACCATCGACACGAAAGGTCTGGACTGTGACATAGACATCCAGAAGAGCATCCAGATGGTGAGAGACCAGCGGTCAGGCATGGTGCAGACTGAAGCCCAGTACAAGTTCATCTACCTGGCCGTCTCTGAGTACATAGAGGCCTCCAAGACCTACAACaagGGAGCTGAGACAGAGTATGGAAATTTGCAGTTCAAACACCAGCCTGCCAGCCGCAAGGTCTCCAAAAACAAGGAACAGGAATTGTATGAAAACCTAGCCAAAGGAAAGAAAGATGTGAAGAAGCAGAAGTCAGAGGAGAAGAAGAGTGGCTCCGTGAGAAAaagatagaggatgagagagctgTGTCCTGATGATTTAATATTGAATTTGATATCaactttttattttaaaatatgtATTTGAGTGTTTTTTGATATCAAGCGATAAAGTTGATGTCTGTGATATAATGAAGATTATAAAGCAAAGTACTGATAGATTTGGGCCCTGGGCCGTGAACCATGGAACCATTCTGCACCCATGCAAATGGTAATGTATTGACATTTTTGCTGACAATAAAGGCTCAGAGTAATATGCA

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 6-like isoform X4

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05697 PTPN6, SHP-1; tyrosine-protein phosphatase non-receptor type 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590419.2 False 2144 mRNA 0.50 16 11862989 11889084
XM_036969153.1 False 2215 mRNA 0.50 17 11862989 11889594
XM_021590425.2 True 2399 mRNA 0.50 16 11862989 11895102

Neighbor

gene id symbol gene type direction distance location
LOC110509614 ret1 coding downstream 582 11858718 ~ 11862407 (-)
c1r c1r/c1s coding downstream 37888 11819613 ~ 11825101 (-)
LOC110509592 LOC100136300 coding downstream 51326 11808113 ~ 11811663 (-)
LOC110509520 lag-3 coding downstream 83721 11776055 ~ 11779268 (-)
LOC110509576 LOC106576947 coding downstream 124933 11727284 ~ 11741584 (-)
LOC110509399 LOC106576265 coding upstream 541 11895643 ~ 11950574 (-)
LOC110509608 LOC105029961 coding upstream 71096 11966198 ~ 11977986 (-)
LOC110509712 LOC106576526 coding upstream 161044 12056146 ~ 12068253 (-)
LOC118945807 LOC106605860 coding upstream 175102 12070204 ~ 12072287 (-)
LOC110503589 LOC106576508 coding upstream 181982 12077084 ~ 12086948 (-)
G224899 NA non-coding downstream 43779 11817060 ~ 11819210 (-)
G224870 NA non-coding downstream 54893 11806137 ~ 11808096 (-)
G224874 NA non-coding downstream 81262 11781410 ~ 11781727 (-)
G224869 NA non-coding downstream 109309 11752851 ~ 11753680 (-)
G224868 NA non-coding downstream 110199 11752418 ~ 11752790 (-)
G224938 NA non-coding upstream 24506 11919608 ~ 11923227 (-)
G224889 NA non-coding upstream 32351 11927453 ~ 11985092 (-)
G224969 NA non-coding upstream 90359 11985461 ~ 11985691 (-)
G224978 LOC106595066 non-coding upstream 99116 11994218 ~ 11996447 (-)
G224955 NA non-coding upstream 122155 12017257 ~ 12017470 (-)
G224873 NA other downstream 66680 11795890 ~ 11796309 (-)
G223969 LOC106605840 other downstream 584361 11275917 ~ 11278628 (-)
G224954 LOC106576536 other upstream 119824 12014926 ~ 12016101 (-)
G224988 LOC106605856 other upstream 176185 12071287 ~ 12081233 (-)
G225099 NA other upstream 441139 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 559286 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 577197 12472299 ~ 12473060 (-)

Expression


Co-expression Network