LOC110503589 (LOC106576508)


Basic Information

Item Value
gene id LOC110503589
gene name LOC106576508
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12077084 ~ 12086948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590799.2
TATTATGTCGTGCACGCACAAAGACTACATAATGAAGAGATGCTCACGTCTCCGCCCTACAGTGGGAAGGTAGGCGACAACCTTGGGTCAAAAATAAGCCCATATAAACGCGTTGGCCTAGTTTCGGACAGAGTTAGAGAGTGAAACCCTCTGGCTTCGCATCAGCGCTCTTTATTTTTTCGATTTAGTAGCTATCTAACAAACGTTCCTTCTGTACAAATGTCTAAAATAGAGTTATTGAGAGTATTTCTAAACCAGAGATTGATAGCGGCAGCTGATGAGATATTTGGTGTCGTTGAAGAAACGATAGCAGAGTACCAGGAAGAGGTTTCTCGCACAAAGGAGGAGAACAGGCGTCTACTGATCACGCTTGATATCCTTACTAAACCAGATAAGTTACATAGACAAGAAGacctccagcagctcactgtcactgtgtctgaTGAGGTGGTTTCCCCTGAGCAGCAGGAGTGGATCCCCAGCCTGGGGCAGAAGGACCCAGAACCCACACGGATGAAAGATGAACAGGATGAACCAAGAACCAGTCAGGAGGATGAGAATAATTTCAATGAGTTTATCAATTCTTACGGCTGTGTATCAAGTGGCTATTATCAGGACCCAACTCAGCCCTCACATGGAGAGAGATACTCTCTACCCAGCACCTCAACTGAACAGATCAAAACAGAACCTTATGTAGAAGACTATGGTGTATCAGAACCAATCAGAGAGCCCCAGCCCTTCTCTGCAGTAGATACTGAGTGTTCTGCAGCTCAGAGTGAAAACAGAGGACATATTGACAGGATGGAGTGTGGAGGACCTCTGTCAGGTCTAATGTTAAAGCCACTAAAATCAAAGAGAACAAAGACAGTAAAAGGACAAAGTTCTCATAGTGTTAAGGACAGGAAATTGAACCATCTAAAATCACACTCGAGACCCAGTGTAAGCTGGGATGCTGCTCCTAGTTGTAAGGTATGTGGAAAGCAATTTGACTCCATGGCGTCTTTATTAAATCATGTACAAGCGCACACACAGGATAAAGAACATCTTTGTGGTGTGTGTGGAAAATTCTGTCAGTCCACAGAAAGTATGATGGATCACCTACAAACTCACATCGGAGCAAAGTGTTGTCATGTTTGCGGTAAATATTTTGCTTGGGATGCTTTCCTGAAAAGGCATTTGAGGagtcatacaggggagaagccgtTTCGCTGTCATCATTGTGGCAAAGGATTCAGTCAGAGTGGAAACCTGGCGGTGCATATGAAGAGCCACTCTGGGGAGAAACCACATCGCTGCCGTGTTTGTGGCAAATGTTTCAGCAGAAACCCTGATCTTACAGTGCACATCAGGACTCATACAGGAGTGGAACCATATAAGGGCAGTATTGTGGCCAAGGATTCAAGCAGAATTATCACCGGAAACTACACATGAAGATCCACTTGGGAAAACCATATCATTGCCATCTTTGTGACATGTATTTCAGCACTAGCACCCAGTCTAGGGCGTGACCCAGTCTGTCACACCCTGGGTGctaggcttttattctctattttggttaggcaagggtgtgactagggtgggcattctattttcttcatttctatgttttctgtttctatgttttggccgggtatggttctcaatcagggacagctgtctattattgtctctgattgggaatcatacttaggcagcctctTTTGCCAcattagttgtgggtagttgtctttgttagtggcctgtatagcccaaGTCAGCTTTATGGTCGTTTTTGTTGGAGACAGTCTTAATAAAAATAAATgcacgctcaccacg
>XM_036969271.1
TTATGCCGTACACGCAGAGACTGGCAGTGCTCTTTGTCTTGACTTAGTTTACGttggtagctagctggctaacttagCTAGTTAGACAACGTTCCTTATAAAAACATGTCTAAAATAGAGTACTTGCGAGTGTTTCTCAACCAGAAATTGATAGCGGCAGCTGAGGAGATATTTGGTGTCGTTGAAGAAACGATAGCAGAGTACCAGGAAGAGGTTTCTCACACAAAGGAGGAGAACAGGCGTCTACGGAGCATGCTGGATATTCGTTCTAAGCCACAGATCAAGTTACATAGACGagcagacctccagcagctcactgtcactgtgtctgaTGAGGTGGTTTCCCCTGAGCAGCAGGAGTGGATCCCCAGCCTGGGGCAGAAGGACCCAGAACCCACACGGATGAAAGATGAACAGGATGAACCAAGAACCAGTCAGGAGGATGAGAATAATTTCAATGAGTTTATCAATTCTTACGGCTGTGTATCAAGTGGCTATTATCAGGACCCAACTCAGCCCTCACATGGAGAGAGATACTCTCTACCCAGCACCTCAACTGAACAGATCAAAACAGAACCTTATGTAGAAGACTATGGTGTATCAGAACCAATCAGAGAGCCCCAGCCCTTCTCTGCAGTAGATACTGAGTGTTCTGCAGCTCAGAGTGAAAACAGAGGACATATTGACAGGATGGAGTGTGGAGGACCTCTGTCAGGTCTAATGTTAAAGCCACTAAAATCAAAGAGAACAAAGACAGTAAAAGGACAAAGTTCTCATAGTGTTAAGGACAGGAAATTGAACCATCTAAAATCACACTCGAGACCCAGTGTAAGCTGGGATGCTGCTCCTAGTTGTAAGGTATGTGGAAAGCAATTTGACTCCATGGCGTCTTTATTAAATCATGTACAAGCGCACACACAGGATAAAGAACATCTTTGTGGTGTGTGTGGAAAATTCTGTCAGTCCACAGAAAGTATGATGGATCACCTACAAACTCACATCGGAGCAAAGTGTTGTCATGTTTGCGGTAAATATTTTGCTTGGGATGCTTTCCTGAAAAGGCATTTGAGGagtcatacaggggagaagccgtTTCGCTGTCATCATTGTGGCAAAGGATTCAGTCAGAGTGGAAACCTGGCGGTGCATATGAAGAGCCACTCTGGGGAGAAACCACATCGCTGCCGTGTTTGTGGCAAATGTTTCAGCAGAAACCCTGATCTTACAGTGCACATCAGGACTCATACAGGAGTGGAACCATATAAGGGCAGTATTGTGGCCAAGGATTCAAGCAGAATTATCACCGGAAACTACACATGAAGATCCACTTGGGAAAACCATATCATTGCCATCTTTGTGACATGTATTTCAGCACTAGCACCCAGTCTAGGGCGTGACCCAGTCTGTCACACCCTGGGTGctaggcttttattctctattttggttaggcaagggtgtgactagggtgggcattctattttcttcatttctatgttttctgtttctatgttttggccgggtatggttctcaatcagggacagctgtctattattgtctctgattgggaatcatacttaggcagcctctTTTGCCAcattagttgtgggtagttgtctttgttagtggcctgtatagcccaaGTCAGCTTTATGGTCGTTTTTGTTGGAGACAGTCTTAATAAAAATAAATgcacgctcaccacg
>XM_036969266.1
AACACGTATTATGCCGTACACGCAGAGACTGGCAGTGCTCTTTGTCTTGACTTAGTTTACGttggtagctagctggctaacttagCTAGTTAGACAACGTTCCTTATAAAAACATGTCTAAAATAGAGTACTTGCGAGTGTTTCTCAACCAGAAATTGATAGCGGCAGCTGAGGAGATATTTGGTGTCGTTGAAGAAACGATAGCAGAGTACCAGGAAGAGGTTTCTCACACAAAGGAGGAGAACAGGCGTCTACGGAGCATGCTGGATATTCGTTCTAAGCCACAGATCAAGTTACATAGACGagcagACCTCCAGCAGCTCCCTGTCACCGTGTCTGATGAGGTGGTTTCCCCTGAGCAGCAGGAGTGGAGCCCCAGCCTGGGGCAGAAGGACCCAGAACCCACACGGATGAAAGATGAACAGGGTGAACCAAGAACCAGTCAGGAGGATGAGAATAATTTCAATGAGTTTATCAATTCTTACGGCTGTGTATCAAGTGGCTATTATCAGGACCCAACTCAGCCCTCACATGGAGAGAGATACTCTCTACCCAGCACCTCAACTGAACAGATCAAAACAGAACCTTATGTAGAAGACTATGGTGTATCAGAACCAATCAGAGAGCCCCAGCCCTTCTCTGCAGTAGATACTGAGTGTTCTGCAGCTCAGAGTGAAAACAGAGGACAGATTGACAGGATGGAGTGTGGAGGACCTCTGTCAGGTCTAATGTTAAAGCCACTAAAATCAAAGAGAACAAAGACAGTAAAAGGACAAAGTTCTCATAGTGTTAAGGACAGGAAATTGAACCATCTAAAATCACACTCGAGACCCAGTGTAAGCTGGGATGCTGCTCCTAGTTGTAAGGTATGTGGAAAGCAATTTGACTCCATGGCGTCTTTATTAAATCATGTACAAGCGCACACACAGGATAAAGAACATCTTTGTGGTGTGTGTGGAAAATTCTGTCAGTCTACAGAAAGTATGATGGATCACCTACAAACTCACATTGGAGCAAAGTGTTGTCATATTTGTGGTAAATATTTTGCTTGGGATACTTTCCTGAAAAGGCATTTGAGGagtcatacaggggagaagccgtTTCACTGTCAAGATTGTGGCAAAGGATTTACTCAGCGTGGACACCTAAACTTACATATGAGGagccacacaggggagaaaccacaTCAATGCCAGGATTGTGGCAAAGGATTCAGTCAGAGTGGAAACCTGGCAGTGCATATGAAGAGCCACTCTGGGGAGAAACCACATCGCTGCCCTGTTTGTGGCAAATGTTTCAGCAGAAACCCTGATCTGAAAGTCCACATCAGGACTCATACAGGGGTGAAACCATATAAGTGCCAGTATTGTGGCCAAGAATTCAAGCAGAATTATAACCTGAAACTACACATGAAGATCCACATGGGAAAAACCATATCATTGCCATCTTTGTGACATGTAGTTCAGCACTAGCACCCAGTCAACCTGGCATGAGATTTCACATGGAAGAGAAGACTTCACTGCAGTGACTGGCAGAGGCTTTGCATAGTATGGAAGTTTGGGAGGACATATAATGACAATGCATAGAATACTTTAGTGTAGAAAATActgattgtagaccttgtttgtGATACATGTTTCACTCAGCCGCTTTATTGAGGAAAGTTTTTACATGCAGTGACTGTTAATATGTGGTTGTTTTACCTGTTTTGAATGTactgactgtaagttgctctgggcAAGAGTGTCAACTAAACgaccaaaatgtaaatgcaaGAACAGTACTCCAACAGTCCAATtaaacacaggagagaagccatataCTTGTGTTATTCAAATGGATGAAGTCCCCTAGAAGGTCTGAGAACATTCACAAGAGGGAGAAACACAAATAACAACCTGATGAAAATCCTCCTGACAACATGGCAGTTGTCCCCTGTGTAGAGAGTTTTTCAGACAATATAAGAAGTGCATTAAACATGTAGTTCTCC

Function

NR:

description
PREDICTED: zinc finger protein with KRAB and SCAN domains 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590799.2 False 1815 mRNA 0.45 2 12077084 12081473
XM_036969271.1 False 1704 mRNA 0.45 2 12077084 12086940
XM_036969266.1 True 1990 mRNA 0.43 2 12084776 12086948

Neighbor

gene id symbol gene type direction distance location
LOC118945807 LOC106605860 coding downstream 4797 12070204 ~ 12072287 (-)
LOC110509712 LOC106576526 coding downstream 8831 12056146 ~ 12068253 (-)
LOC110509608 LOC105029961 coding downstream 99098 11966198 ~ 11977986 (-)
LOC110509399 LOC106576265 coding downstream 126510 11895643 ~ 11950574 (-)
LOC110509511 ptn6 coding downstream 181982 11862989 ~ 11895102 (-)
LOC110509720 LOC106576492 coding upstream 226 12087174 ~ 12089471 (-)
LOC110509756 LOC106605861 coding upstream 24435 12111383 ~ 12112865 (-)
trnav-uac NA coding upstream 43223 12130171 ~ 12130246 (-)
LOC110509802 LOC106576373 coding upstream 345221 12432169 ~ 12438782 (-)
LOC110503604 LOC106605712 coding upstream 583541 12670489 ~ 12673805 (-)
G224956 NA non-coding downstream 23315 12020965 ~ 12053769 (-)
G224959 NA non-coding downstream 27547 12045392 ~ 12049537 (-)
G224955 NA non-coding downstream 59614 12017257 ~ 12017470 (-)
G224978 LOC106595066 non-coding downstream 80637 11994218 ~ 11996447 (-)
G224969 NA non-coding downstream 91393 11985461 ~ 11985691 (-)
G225019 NA non-coding upstream 49503 12136451 ~ 12139918 (-)
G225032 NA non-coding upstream 76775 12163723 ~ 12169705 (-)
G225048 NA non-coding upstream 140610 12227558 ~ 12227877 (-)
G225061 NA non-coding upstream 179427 12266375 ~ 12308268 (-)
G225068 NA non-coding upstream 192583 12279531 ~ 12280566 (-)
G224954 LOC106576536 other downstream 60983 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 267738 11808113 ~ 11811663 (-)
G224873 NA other downstream 280775 11795890 ~ 11796309 (-)
G224869 NA other downstream 323404 11752851 ~ 11753680 (-)
LOC110509576 LOC106576947 other downstream 335500 11727284 ~ 11741584 (-)
G225099 NA other upstream 249293 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 367440 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 385351 12472299 ~ 12473060 (-)
G226124 NA other upstream 979925 13066873 ~ 13067357 (-)
G226187 NA other upstream 1090230 13177178 ~ 13180272 (-)

Expression


Co-expression Network