LOC110509802 (LOC106576373)


Basic Information

Item Value
gene id LOC110509802
gene name LOC106576373
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12432169 ~ 12438782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590919.2
CTTGATGACTGACAGCGAATGTATCCAATCATTGCCTTCCAGAGTCTCAAGGCCAGAGCGAAAGGCAGCGGAGTGTGCCGACAACAGGGGAACGATCCGCGGACAAACGATGTTTTTCGTGCACCGAAATGTTTCTCTGCCAGAAGGTTCACGATTTTAAAGTGTACTGTTCAATCAGTGCATTATTCACTTAAAGACGGAACGGAGAGTGCATTGTTGCTTTTGCGGAGCTTTGTGACTACCTCACGAGGGATTGTCCAACGACAGTAGATGAGAGGCTCCCTCCCTGTTGTCCTGACATCACAGAACATCATAGTGAGAGACCTGAGGAAAGAGGCTAGCTACTTTACAAATCATTGTTACTGGTTCAAGCCCTAAAACTCACAACACACTGTTTGCTCACAAACAGACTTCAAAGTCTTAAATTCAACCATCGAGGCACACTTGTATCAGGATCGTAACACAGAGATATAACTCAGACCAGGACAGGATACTTTTTCTCATTCATTGAATTGTgctgactaacacacacacacacacacacgacacggTCCTACAAAAACCGCCTTGCAGTAGTCATGGATGACCAGCAGGAGGACCCAGAGGGCATGTACGACGTGCAGCACCAGTACATGTGCAGCGAGTGCCACCAGCTCTTTAACACCCTAGAAGAAGTGCTGATGCACCAGCAGATCCACACAGggcaggagggagaagagggggaggctGGGGAGGCCATGGCCATCCAGGGCATCTCAGAGTACGGGGACAGCCAGTATCAGTGCCTGGAGTGTGGTGCCCTCCTCAGGAACCCAGATGAACTGCTACTGCACCAGGAGCTGCAcatgagagaggcagggttggaGACAGAGGACCATGaactgtgtgagGTGTTAGAGACAGACGAGGCAGGGACAGAGGGCCAGGTGTCGGGGCCTGTCCAGTACCAGTGTCTAGACTGCCTGGCCCTGTTTGACTCTCCAGAGGTGTGGCTGGCCCACAGACAGACCCACAGCAAGAGCAGCACACACAGTGCCACAGAGACTgAGTATGTGTTGCAGCCCGATGGTACTGTGACACCCTTGGTCAGTGTTCAGAACTTTGTCTTGAGTGAACAACAAGCTGGGGAGATCTTAGCACAGGTCCTggcccaacaacaacaacatcagtcTGCCCCCCAGCCCTCGACCCCCTCCCGGGCCACCTTCCTACCCCCCGTCTCCCCCCTTCCCGGCTCGGCCACCATGCGTCTCCAGATCTGCAGTGCCCAGGCCCTGGCCGATGGCTCCAGTACCCCCGGCCTACGGCGCGCCAAGCTGCTGCCCCCTCTGCTCACTCCTCTAGGGGTGGGCTCGGTAGGAAAGCTGGGGGTCACGGAGAATGGCCTCCAGAGACTGGAGGTGGTGCTGTCTGCTGTCCGGGAGGAGAAAGAGCAGCAGGGGGAGGTGGTGATCTTCCACCCCTATGAGTGCTCCGAGTGTGCCCTCCTCTTCCAGACCCCAGAGGACTTCCTGCAACACCAGGGGGAGCACTTCCTGGCCCAGGAGAAGGAGAGCGGTGAGGACGGGGTGATGATGGGATacgaggaggacagagggagggaggaggagagagaggaggagaatgggGGGAGGGtggcagaggagagggggaagggaacgGGGAGACGCGCCCTGGCTAAAAGAGCTAGAACCACACCACTATGCCTGCACTGCAGCCAATGCCAGCGTACCTTCACGTCAGCCAATCGGCTGGCGGCACACAGGCGCGTGCACGAGCATGGCACATACGAGTGCCGGGAGTGCGACAAGGTGTTTAAGAAGGCGATGTCACTGCAGACACACATGCGCTCTCACTCCGGGGAGGCTCGGTATCTGTGTGTGGACTGTGGTCACGGCTTCAACACAGAGATGACCCTCATCATACACAGGAAGTCTCACACAGCAGAGCCGCTCCACAGGTGTGAGCACTGTGCCAAGACCTTCACCAATATGACCAAGTTCCTGTACCACCGTAGAACACACACCAaaacagccaccactacaccTACCCCTGTCGTCCTGGTCCCAGCGGCCCCCAGGAGGATGTCCCTGTCAGCCCTGTCCATCCTTCAGAGAGCCCGGGCCCttagggagaggggtgagggcaGCCCCATGGAGGGGGACGAGGAGAACCTGATGGCCCCCCTTACTGAGGCTGAGATGGAGATAGGCGAGTCGGGGGAGGACACTGCCTCCAGCTCTCTGAGCAGggcagagggaggaaaggagaacagGGTGGATGTGGAGGGGACACCAGGGGGCAGTGGAGAGTCCCAACCGGGAGAACATACTGCTGATCCTGGTTCCTCTACTGACCCTAACCTCGCTGGTCCCTGGGGCGCGTTCCCCTGCCCCTCCTGCCCTCAGGCTTTCCCCTCCCTGCTCCGCTTGGTCAAACACCGCCATACGGCCCACGTCTCCGAGCGACACTTCAAGTGCTCCGTGTGCACCAAGACCTTCAAGAAGCAGATGCACCTACGCAACCACCTGCGTACACACACCGGCGAGCGGCCCTTCCAGTGCTCAGACTGCGGCAAGACCTTCTCGTCCCTGGCCAACCTGTCTCGCCACAACCTCACCCACTCTGGCGTGCGCCCCTACCGCTGCGACATCTGCCACCGGACATTCACCCAGTCATCCAACCTCCGGCAGCACCGCCTACTCCATGCCAACCTCCCTCCCTGGCCCTGCCCGGACTGCCCCGCCACCTTCGTACGGCCGGCCAAGCTAGCCGCCCACCGCTACACTGTTCACCCGGGGGCCCCGGCCCCGTTCTCCTGCCCCCAATGCCAGGCTGGCTTTCTGCACAGGAGGAAGAGAGACCGCCACTGTCAGGAGGTCCACCCCACTGAGGcccaggcagacagagagggtgggttaGAGAGCCAGCCCCAAGTGTACCCTGACGGGGAGCCCCTCTCAGAGCCCTCCACCTCAGAAGACACCGGGACCACCAGCATCATGAGAGGGGGCCTGGACTGCACTGTGTGTGGGAAGAAGCTCAACTCTGCAGCCAACTGGCGTCTGCATCAGCTGAGCCACGGCCTGGTTCCTGGTCGGTCCTGTGGTGGTGCAGTGGCCAGGGGTAAATCCCACCAGTGCCTAACCTGCGGTAAGCTGTTTGTCTCCTCCTCTGGTGTGACCTTGCATCAGCGCATCCACACAGGAGAGCGCCCCTTCCCCTGCAACCTGTGTGGCAAGCGCTTCCGTCAGAACACGCACCTGCGAGAGcacctgcgcacacacacaggggagcgGCCGTTCCGCTGCGAAATATGTGACAAGGGCTTTGTCCAGAGCATGCACCTGGCGGAGCACCGGCGGACGCACACGGGGGAGCGCCCCCACGCCTGTCTGGTGTGCGGCAAGGCCTTCAAGTCCTTCTCCAACCTGCGGAACCACAGGAAGACCCACGCACGCCAGCAGAGGCAGGAGGAGGCGGCTGCAGCACAGGTTGCCATGGAGACCAGCACCGCCGTGGCGCTAGTGGAGGCATCCCAGGTGGAACTGGCCAATGGGCAGCCTCAGCTGATCCACATACAGACGTCGACCCTACAGCAGACCCAGGGTACTCCCACCATCATGTGTAATGAGTTTGGGGAGACCATCGCCATCATAGAGACCAGTGAGGGAGGAACCCTACCCCTGGCTGAGGCTATAGAGATCTACCACACAGCCCTGGAGAGCAGTCTGAGGATGGACTCCATCTCTGTAGACAGTCTACAGCTCATCTAAAGGCCAGACAGAGACAACTCAGAACCATGACCGGACCATCAGATAACCCTCACACGACGATCTAGATGTTCTGAGGGTCAAAGAGACACAACTCGGAACTATCACAGACCTGTCAAACAAGCCTCACAGAGTTATCGACAGCTACCGAGAGCCAGTGAGAGGCTCAACTATCGGAGAACCATGACAGAACTACCTGTGTGGGCTGTGGGAGTGTACTGACTCTTGACTGGCAGAGAGCATGTTTTACTGACTGTTATCCTATTGGGGTGAATGTATGGGGAGCAGTAGAAGATTAAACTGTGATCTAGTGAACTACAGCAGTGTAGGTACACTGGTCTGGTTGTCATTGTTGAGTACAAAAATGATTCTACAATTGCAGCAGGCAGGACAACAGTAGGTGTTCATTCACTCCTCCAGACCAAATGTGTTACGATCTCATGTTCAGAAAGACAGGGCAGAGCCGGTCAGTGGTGGTGGAGAGGTAGTGACAGACGTGAATCGAGGGCCATTTCCTGTGTTTGTCATGTTCTTGACTGCCCATGGATGTTCATTCAGTGCTTGTCTGTAATATGTGATTTTTACTTTGAAAACAATGACTGTTCCTCTTTTTGCTGTGAACAGATAAATGAATGATTAAATGATATTTGATAATA

Function

NR:

description
zinc finger protein 574-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590919.2 True 4429 mRNA 0.57 8 12432169 12438782

Neighbor

gene id symbol gene type direction distance location
trnav-uac NA coding downstream 301923 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 319304 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 342698 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 345221 12077084 ~ 12086948 (-)
LOC118945807 LOC106605860 coding downstream 359882 12070204 ~ 12072287 (-)
LOC110503604 LOC106605712 coding upstream 231707 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 249697 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 252850 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 288282 12727064 ~ 12732403 (-)
LOC118944453 LOC106605569 coding upstream 296971 12735753 ~ 12745687 (-)
G225124 LOC106576258 non-coding downstream 1221 12428828 ~ 12430948 (-)
G225148 NA non-coding downstream 17758 12413593 ~ 12414411 (-)
G225088 LOC106576393 non-coding downstream 71376 12355815 ~ 12360793 (-)
G225096 erf non-coding downstream 104102 12325864 ~ 12328067 (-)
G225061 NA non-coding downstream 123901 12266375 ~ 12308268 (-)
G225170 LOC106576357 non-coding upstream 31728 12470510 ~ 12472088 (-)
G225177 NA non-coding upstream 39482 12478264 ~ 12480006 (-)
G225193 NA non-coding upstream 85883 12524665 ~ 12524898 (-)
G225194 NA non-coding upstream 87173 12525955 ~ 12526228 (-)
G225195 NA non-coding upstream 87615 12526397 ~ 12526741 (-)
G225099 NA other downstream 91203 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 350936 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 416068 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 622823 11808113 ~ 11811663 (-)
G224873 NA other downstream 635860 11795890 ~ 11796309 (-)
G225127 LOC106605865 other upstream 15606 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 33517 12472299 ~ 12473060 (-)
G226124 NA other upstream 628091 13066873 ~ 13067357 (-)
G226187 NA other upstream 738396 13177178 ~ 13180272 (-)
G226224 NA other upstream 785102 13223884 ~ 13224515 (-)

Expression


Co-expression Network