LOC110505096 (tigit)


Basic Information

Item Value
gene id LOC110505096
gene name tigit
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12688479 ~ 12690874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584068.2
CTATCTGTAGCGGTTTGTTAACCCACATTAGACTAGTCTTTTCCACCATCTATGCTCAGTTCATGATTGATGCTTCAGTTAATTTACTTTGCAACCATTTGAGAGTGTTTTGACCGTGTGTAGACCATAGATCACACAGATCACATTTCTAGCAGGAGTGCTATGGAAAAATGCAGACTGTCTGCCTTTTTGCTGCTGGTACACATTGGCCTCTCTTCAGTAGTGTTGGAAGCTCAGGTCAGTGTTGAACCACAGGTGACAGGGTACCTGGGTAATGATGTCACACTGCGTTGTAAGTTGCTCCAGGGCAATCTCATTCAGGCTGAGTGGCAGTGGGAGATATCAGATACTGAAAAGTTTACCATAGCTGTCTTTAGCCCTAATTTAGGTCAAAACATTTCTGAGTCACCTCTAAAAGGGAGGTTGGAGTTCGCTGGAGCTTCCACAGGTGATTCCTCTATTACTATAAAAGATGTGGAGATGACTGATGCAGGGAAATACATCTGTCTCCTGACAGTCTTCCCTAGTGGCTCAATTGCGAGGACAACCATCCTCACTGTACTGAATCAGATTCCACCTCCATCATCTGGCGAGGTTGTGGGAATTGTTACCGCAGCCCTCCTGGTAACAGTTGTCGTGACAGCCACAGCTTACCTCATCATTGTCAGGAAGAGGCACAAGGCTATATTCAACCCCTCTGTCAGCATTGATACAAGCAGCCTGGTGGTCAATGCAGACaggacaggaagagaagagGACCTGGTTTATTCTGAGATCGTCAGATTCAACATTGACAAGAGGAAAGCACACGACCCATCTGGAGAAGACCAGAAAGATGCAGACGTCAAGCCAGCTGAGGATGTCACCTACTCTGCAGTGGCAGTGGGAAACCAGCATTCTTTAAGGGAAGACACAGTTTACTCTCAGGTGGTGAGAAAGGACTGGGACATAGATGATGTATGGATTGTCTAAGCACAATAACAGTAAAGGGATAACCAGACATCCTTTATATTCACATACATTTAACTGAAGTTATCTCTTGTTGGGGAAGTGACCTCCTTATTAGACAAAGCCATCTAGATCCTACAGAAGGGCTATGTGTGTGAATACTGAAAAATTattgccaccaacagaatgctatatatatcgggcatacaacaatctcagctctgtagattttgttgcgaagagacagaatcaatagatcatttattctggtatt
>XM_021584076.2
TCTATCTGTAGCGGTTTGTTAACCCACATTAGACTAGTCTTTTCCACCATCTATGCTCAGTTCATGATTGATGCTTCAGTTAATTTACTTTGCAACCATTTGAGAGTGTTTTGACCGTGTGTAGACCATAGATCACACAGATCACATTTCTAGCAGGAGTGCTATGGAAAAATGCAGACTGTCTGCCTTTTTGCTGCTGGTACACATTGGCCTCTCTTCAGTGTTGGAAGCTCAGGTCAGTGTTGAACCACAGGTGACAGGGTACCTGGGTAATGATGTCACACTGCGTTGTAAGTTGCTCCAGGGCAATCTCATTCAGGCTGAGTGGCAGTGGGAGATATCAGATACTGAAAAGTTTACCATAGCTGTCTTTAGCCCTAATTTAGGTCAAAACATTTCTGAGTCACCTCTAAAAGGGAGGTTGGAGTTCGCTGGAGCTTCCACAGGTGATTCCTCTATTACTATAAAAGATGTGGAGATGACTGATGCAGGGAAATACATCTGTCTCCTGACAGTCTTCCCTAGTGGCTCAATTGCGAGGACAACCATCCTCACTGTACTGAATCAGATTCCACCTCCATCATCTGGCGAGGTTGTGGGAATTGTTACCGCAGCCCTCCTGGTAACAGTTGTCGTGACAGCCACAGCTTACCTCATCATTGTCAGGAAGAGGCACAAGGCTATATTCAACCCCTCTGTCAGCATTGATACAAGCAGCCTGGTGGTCAATGCAGACaggacaggaagagaagagGACCTGGTTTATTCTGAGATCGTCAGATTCAACATTGACAAGAGGAAAGCACACGACCCATCTGGAGAAGACCAGAAAGATGCAGACGTCAAGCCAGCTGAGGATGTCACCTACTCTGCAGTGGCAGTGGGAAACCAGCATTCTTTAAGGGAAGACACAGTTTACTCTCAGGTGGTGAGAAAGGACTGGGACATAGATGATGTATGGATTGTCTAAGCACAATAACAGTAAAGGGATAACCAGACATCCTTTATATTCACATACATTTAACTGAAGTTATCTCTTGTTGGGGAAGTGACCTCCTTATTAGACAAAGCCATCTAGATCCTACAGAAGGGCTATGTGTGTGAATACTGAAAAATTattgccaccaacagaatgctatatatatcgggcatacaacaatctcagctctgtagattttgttgcgaagagacagaatcaatagatcatttattctggtatt

Function

symbol description
tigit Enables identical protein binding activity and signaling receptor binding activity. Involved in negative regulation of interleukin-12 production and positive regulation of interleukin-10 production. Acts upstream of or within negative regulation of T cell activation. Located in cell surface.

NR:

description
uncharacterized protein LOC110505096 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584068.2 False 1222 mRNA 0.44 6 12688479 12690873
XM_021584076.2 True 1220 mRNA 0.44 6 12688479 12690874

Neighbor

gene id symbol gene type direction distance location
LOC110503604 LOC106605712 coding downstream 14674 12670489 ~ 12673805 (-)
LOC110509802 LOC106576373 coding downstream 249697 12432169 ~ 12438782 (-)
trnav-uac NA coding downstream 558233 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 575614 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 599008 12087174 ~ 12089471 (-)
LOC110509848 LOC106575652 coding upstream 758 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 36190 12727064 ~ 12732403 (-)
LOC118944453 LOC106605569 coding upstream 44879 12735753 ~ 12745687 (-)
LOC118944488 NA coding upstream 61808 12752682 ~ 12753786 (-)
LOC110509853 NA coding upstream 62924 12753798 ~ 12758180 (-)
G225292 NA non-coding downstream 14889 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 19223 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 20909 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 22170 12666103 ~ 12666309 (-)
G225266 NA non-coding downstream 23900 12662483 ~ 12664579 (-)
G225345 LOC106578696 non-coding upstream 89049 12779923 ~ 12781221 (-)
G225369 LOC106578676 non-coding upstream 123125 12813999 ~ 12820135 (-)
G225368 NA non-coding upstream 123549 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding upstream 124063 12814937 ~ 12821075 (-)
G225370 NA non-coding upstream 150437 12841311 ~ 12843899 (-)
G225171 LOC106605713 other downstream 215419 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 230688 12454388 ~ 12457791 (-)
G225099 NA other downstream 347513 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 607246 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 672378 12014926 ~ 12016101 (-)
G226124 NA other upstream 375999 13066873 ~ 13067357 (-)
G226187 NA other upstream 486304 13177178 ~ 13180272 (-)
G226224 NA other upstream 533010 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 653200 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1235800 13909746 ~ 13927861 (-)

Expression


Co-expression Network