LOC110503604 (LOC106605712)


Basic Information

Item Value
gene id LOC110503604
gene name LOC106605712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12670489 ~ 12673805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503604
ATGGCCACGTTGTGGAGGAGCCTGTTCAAATATATCTGTATCTTCTTCCTGCTGGCCCTGTCAGGCCTCTTCTTTCTGTTCAGCAACATTAACATTCTGGAGTTGGAGGCTCTGGTCCATATGCATGACTTCCAGGGGCGTCCCAAAAGCTATGGTGGAGACTTCTTGCTGGCCCAGCTGCATTCCTCCAAGTTGGAGGCAGGCGTTGAAGGACAGGTGTTGGACCACAGGAATGGGACCTACTCTGCCTACTGCCATTTTCCCGTTACTATGGCAGGGGTCTGCAAGGGTGGAGATGACCCTGGTCCATTCTAGAGAGGCAATTCACATTCTACAATGGATACGAGAGGAACAGCCCGACCGGATTCCCTTACAGAGTCTGTTCCGCTCTGGAAAACTGTCCCAGACAACTGTATGTAACCTGTGTCTGCCGACAAACCAGAAGCCGCTGTGCAATTTCACAGACCCCCACACAGGGGAGCCCTGGTACTGCTACAAGCCCAAGCTGCTGAGCTGTGACACACGGATCAACCACGCCAGGGGACCCTACAGTATGTGAACCATCTGCTCGTGAACAAGGAGGCATTGCTCTTTCAGAGTGACGTAAACATCAAAGTTCCCATTCATCCTTCGGGGTCTGACAGTGTCATTGTGTTGCCTGGGAAAAAAGACGTGGAGAGAAGCAGCATGAAGACGGAGTCTACCAGGATCACTCCTTCCGGGTATTACTTCCAAGGGTCATAGCGAGTGCTGGGTGGTGGTATGATGCGCCCGTTTAACGACTCGTCTGCCACTCAGTGTCTGAAGGGCAAGGTGGTGTGGTGTACATGTACAGATACTATACTGTCAGACAGTGGTTTGAGTACCTCAACACCTTAGTACCAGAGCTGAAGGAGTTCAACCTTTACAATCCTAAGAATGTGGGGCCCTTCATGGCAGTGGACAGCAcccacaacatcctgctgaaataCCGTTGTCACGGTCCTCCAATCCGCTTCAACACTGTCATCGCCAGTGAGATGCGCTATGTAGCTAATGAGCTGGAAGGCCTGACTGGCAGGTTAAACATTGTGGTGATTATCAGTGTATGGTCCCATTTCAGCACCTTCCCTGTGCAGCTCTACATTCGCCGACTACGCCACATTCGGCGGGCGGTGGTGCGGCTTCTGAACCGGGCTTCGGGGACGCTGGTGGTGTTGCGCTCGGCCAACTTCCAGGCCCTGGACCCGAAAGTGAGCCTGTACAATGGTGACTGCTTCTCAGTGCAGCTGGATGGGGTGGTCAGGGCAATGTTCAGGGGTCTGGATGTTTTGCTGATAGATACCTAGATGACCCTTGCCCACCACCTCCCCCATTCCCTCCACCCACCTTCTATCATCATCAAGAACATGATAGACGTTATCCTCTCATGTCTGCCCATAGTAGAGCTAGCATATTAAGATAGATTTATGTCAGAATTCTCTATCATTCAACACCTACTGTATACAATATTCAACAAATTCCTAGAAATACCCAATTCTGCATACCATACATGTACATTATGTGCGCTTccaatgacatagactgaccaaatGAATCCAGCTAACATagaccacccaaaggacatccagctaacttgacacaactgtgggaatgaTTGGaggcaacatgggccagcatccctttggaatgctttcgacaccttgtagagtccatgccccgacgaattggggc

Function

NR:

description
NXPE family member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503604 True 1713 mRNA 0.51 5 12670489 12673805

Neighbor

gene id symbol gene type direction distance location
LOC110509802 LOC106576373 coding downstream 231707 12432169 ~ 12438782 (-)
trnav-uac NA coding downstream 540243 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 557624 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 581018 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 583541 12077084 ~ 12086948 (-)
LOC110505096 tigit coding upstream 14674 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 17827 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 53259 12727064 ~ 12732403 (-)
LOC118944453 LOC106605569 coding upstream 61948 12735753 ~ 12745687 (-)
LOC118944488 NA coding upstream 78877 12752682 ~ 12753786 (-)
G225290 NA non-coding downstream 1233 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 2919 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 4180 12666103 ~ 12666309 (-)
G225266 NA non-coding downstream 5910 12662483 ~ 12664579 (-)
G225267 grik5 non-coding downstream 8302 12661975 ~ 12662187 (-)
G225345 LOC106578696 non-coding upstream 106118 12779923 ~ 12781221 (-)
G225369 LOC106578676 non-coding upstream 140194 12813999 ~ 12820135 (-)
G225368 NA non-coding upstream 140618 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding upstream 141132 12814937 ~ 12821075 (-)
G225370 NA non-coding upstream 167506 12841311 ~ 12843899 (-)
G225171 LOC106605713 other downstream 197429 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 212698 12454388 ~ 12457791 (-)
G225099 NA other downstream 329523 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 589256 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 654388 12014926 ~ 12016101 (-)
G226124 NA other upstream 393068 13066873 ~ 13067357 (-)
G226187 NA other upstream 503373 13177178 ~ 13180272 (-)
G226224 NA other upstream 550079 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 670269 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1252869 13909746 ~ 13927861 (-)

Expression


Co-expression Network