G225267 (grik5)


Basic Information

Item Value
gene id G225267
gene name grik5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12661975 ~ 12662187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU257618
TCCCCCAGTCAGGGGTCCCGAGCCACTGTAGAGCTTGCCGTTGCTGAGGCGCATCTCCCGTACGAGGCGGAGTGGCCGCTGGGTCCCCAGGGCGATGCGGGTGGGGTGACGGAGGGCCGCGGATTTGCCCAGGGGGCGACGACGACGGGAACGGGAACTCTTCTTACAGGAGACGGCGTTTCGGAACTCTGTGAGCAtctcctgacagacaga

Function

symbol description
grik5 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain; eye; retinal inner plexiform layer; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human GRIK5 (glutamate ionotropic receptor kainate type subunit 5).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257618 True 213 lncRNA 0.66 1 12661975 12662187

Neighbor

gene id symbol gene type direction distance location
LOC110509802 LOC106576373 coding downstream 223193 12432169 ~ 12438782 (-)
trnav-uac NA coding downstream 531729 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 549110 12111383 ~ 12112865 (-)
LOC110509720 LOC106576492 coding downstream 572504 12087174 ~ 12089471 (-)
LOC110503589 LOC106576508 coding downstream 575027 12077084 ~ 12086948 (-)
LOC110503604 LOC106605712 coding upstream 8302 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 26292 12688479 ~ 12690874 (-)
LOC110509848 LOC106575652 coding upstream 29445 12691632 ~ 12700659 (-)
LOC110505108 LOC106578919 coding upstream 64877 12727064 ~ 12732403 (-)
LOC118944453 LOC106605569 coding upstream 73566 12735753 ~ 12745687 (-)
G225283 NA non-coding downstream 930 12660805 ~ 12661045 (-)
G225282 NA non-coding downstream 1304 12659696 ~ 12660671 (-)
G225281 NA non-coding downstream 2428 12659204 ~ 12659547 (-)
G225280 grik5 non-coding downstream 3091 12658663 ~ 12658884 (-)
G225279 NA non-coding downstream 4161 12657159 ~ 12657814 (-)
G225266 NA non-coding upstream 296 12662483 ~ 12664579 (-)
G225284 NA non-coding upstream 3916 12666103 ~ 12666309 (-)
G225287 NA non-coding upstream 5175 12667362 ~ 12667570 (-)
G225290 NA non-coding upstream 6860 12669047 ~ 12669256 (-)
G225292 NA non-coding upstream 10869 12673056 ~ 12673590 (-)
G225171 LOC106605713 other downstream 188915 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 204184 12454388 ~ 12457791 (-)
G225099 NA other downstream 321009 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 580742 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 645874 12014926 ~ 12016101 (-)
G226124 NA other upstream 404686 13066873 ~ 13067357 (-)
G226187 NA other upstream 514991 13177178 ~ 13180272 (-)
G226224 NA other upstream 561697 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 681887 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1264487 13909746 ~ 13927861 (-)

Expression


Co-expression Network