LOC110509608 (LOC105029961)


Basic Information

Item Value
gene id LOC110509608
gene name LOC105029961
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11966198 ~ 11977986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969185.1
TCGTTATACATTAGTGCCTACTCACATGCAGACAATAAAGTGTGTAGTGGTGGGGGACGGAGCTGTAGGAAAGACCTGTCTACTTATCTCCTACACAACCAACAAGTTCCCCTCAGAATACGTGCCTACGGTGTTTGATAATTATGCAGTGACGGTGATGATCGGAGGGGAACCCTACACACTTGGGCTTTTTGACACAGCAGGTCAGGAGGATTACGATAGGCTGCGACCTCTCAGCTACCCGCAGACGGATGTCTTCCTCGTCTGTTTCTCCTGCGTCTCACCCTCATCCTTTGAGAATGTCCGAGAGAAGTGGGTTCCAGAGATCTCCCATCACTGTCCTCGTACACCCTTCCTGTTGGTGGGCACCCAGGTGGATCTGAGGGACGACAGCAACACTGTGGAGAAGCTGGCCAAGAACAAACAGCGGCCCCTGTCCCCTGAGAGCGGAGACAAGCTGGCCCGGGACCTCCGGGCCGTCAAATATGTGGAGTGCTCCGCCCTCACGCAGagggggCTGAAGAACGTGTTTGACGAGGCCATCCTGGCAGCTTTGGAACCTCCTGAGACTAAACCCAAGAAACGCTGTGTCCTgttataaagggagaaggagtggtAGAGGGGCAGGGTTAAGAATAGGCGAGTTGGTTACAAATAAGAGAAGCAGATCAACAGCTTGAAAAAGGACAAAAAAGAGTGAAAAGGAAGGCGATGAAATGGCATCGAGACTCCAATACATTCATGCACTGTGCCTTCTTAATATGTATTGAAAAATGGAGAGGAGAGCGATTTGGTCTTTCAAGTAAAGAATACAAGTGGGGAAGGAATCAACAGAACTTTCATCTAGTCTCCTTCTCCAGATACACTTTAGACATTTGAAGTGTTTACCCTAACATTACTTCTGTGGGGCGGGCTCTCCTACCTGCCCGTCATGTTGCCTTTGTGCCTAgcttaaatgaaataaatacctTGGGGAAACACTTAATTGACATTTTCTTTAGTTGCTACtttgaggagggagggggagaacaCAAGATTAGTTTCCACTCCCGACCAGGCTAGCATGCTAGAATGGTCACTTTTTCTTTTGGGACACACCAAGTGCATTTTCGCCTCAGATTTTACTGCCTTCTGAAGGCAACACAGAActgaatatatattattttttatctCTTTTTGTGTAATGTATGATGTATTAATTTTATAATTTTCTTTTGGGAAATTCTTAGCGTATATTATATTCTTTTGGGAGTAATTCaaaacgtcttttttttttttgcttgacTACCAActtgattgtgattggttgatagTATAACACATTAAGCTGTACTATTTTGAATAGCTGAACTTAATCTTGATAATAACAATGATGGTGAGATTATAACCGTTTCCTAGTCAACTTCTGGATGTTTGTAATTGCAGAATGTTTGTAATAAAATAGTTGAACTGACACAGTT
>XM_021590602.2
ggggggggggggggggggagagaatcCTCGCTCGCAGCTGCGCAGAAGTGGTCTAGTCAAACCCGGATGTAACCAACGCCTAATTGCCGGAGAAAAACGATGCAGACAATAAAGTGTGTAGTGGTGGGGGACGGAGCTGTAGGAAAGACCTGTCTACTTATCTCCTACACAACCAACAAGTTCCCCTCAGAATACGTGCCTACGGTGTTTGATAATTATGCAGTGACGGTGATGATCGGAGGGGAACCCTACACACTTGGGCTTTTTGACACAGCAGGTCAGGAGGATTACGATAGGCTGCGACCTCTCAGCTACCCGCAGACGGATGTCTTCCTCGTCTGTTTCTCCTGCGTCTCACCCTCATCCTTTGAGAATGTCCGAGAGAAGTGGGTTCCAGAGATCTCCCATCACTGTCCTCGTACACCCTTCCTGTTGGTGGGCACCCAGGTGGATCTGAGGGACGACAGCAACACTGTGGAGAAGCTGGCCAAGAACAAACAGCGGCCCCTGTCCCCTGAGAGCGGAGACAAGCTGGCCCGGGACCTCCGGGCCGTCAAATATGTGGAGTGCTCCGCCCTCACGCAGagggggCTGAAGAACGTGTTTGACGAGGCCATCCTGGCAGCTTTGGAACCTCCTGAGACTAAACCCAAGAAACGCTGTGTCCTgttataaagggagaaggagtggtAGAGGGGCAGGGTTAAGAATAGGCGAGTTGGTTACAAATAAGAGAAGCAGATCAACAGCTTGAAAAAGGACAAAAAAGAGTGAAAAGGAAGGCGATGAAATGGCATCGAGACTCCAATACATTCATGCACTGTGCCTTCTTAATATGTATTGAAAAATGGAGAGGAGAGCGATTTGGTCTTTCAAGTAAAGAATACAAGTGGGGAAGGAATCAACAGAACTTTCATCTAGTCTCCTTCTCCAGATACACTTTAGACATTTGAAGTGTTTACCCTAACATTACTTCTGTGGGGCGGGCTCTCCTACCTGCCCGTCATGTTGCCTTTGTGCCTAgcttaaatgaaataaatacctTGGGGAAACACTTAATTGACATTTTCTTTAGTTGCTACtttgaggagggagggggagaacaCAAGATTAGTTTCCACTCCCGACCAGGCTAGCATGCTAGAATGGTCACTTTTTCTTTTGGGACACACCAAGTGCATTTTCGCCTCAGATTTTACTGCCTTCTGAAGGCAACACAGAActgaatatatattattttttatctCTTTTTGTGTAATGTATGATGTATTAATTTTATAATTTTCTTTTGGGAAATTCTTAGCGTATATTATATTCTTTTGGGAGTAATTCaaaacgtcttttttttttttgcttgacTACCAActtgattgtgattggttgatagTATAACACATTAAGCTGTACTATTTTGAATAGCTGAACTTAATCTTGATAATAACAATGATGGTGAGATTATAACCGTTTCCTAGTCAACTTCTGGATGTTTGTAATTGCAGAATGTTTGTAATAAAATAGTTGAACTGACACAGTT

Function

NR:

description
PREDICTED: cell division control protein 42 homolog

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969185.1 False 1460 mRNA 0.44 6 11966198 11977805
XM_021590602.2 True 1534 mRNA 0.45 6 11966198 11977986

Neighbor

gene id symbol gene type direction distance location
LOC110509399 LOC106576265 coding downstream 15624 11895643 ~ 11950574 (-)
LOC110509511 ptn6 coding downstream 71096 11862989 ~ 11895102 (-)
LOC110509614 ret1 coding downstream 103791 11858718 ~ 11862407 (-)
c1r c1r/c1s coding downstream 141097 11819613 ~ 11825101 (-)
LOC110509592 LOC100136300 coding downstream 154535 11808113 ~ 11811663 (-)
LOC110509712 LOC106576526 coding upstream 78160 12056146 ~ 12068253 (-)
LOC118945807 LOC106605860 coding upstream 92218 12070204 ~ 12072287 (-)
LOC110503589 LOC106576508 coding upstream 99098 12077084 ~ 12086948 (-)
LOC110509720 LOC106576492 coding upstream 109188 12087174 ~ 12089471 (-)
LOC110509756 LOC106605861 coding upstream 133397 12111383 ~ 12112865 (-)
G224938 NA non-coding downstream 42971 11919608 ~ 11923227 (-)
G224931 NA non-coding downstream 68304 11891092 ~ 11897894 (-)
G224920 NA non-coding downstream 99914 11865937 ~ 11866284 (-)
G224919 NA non-coding downstream 100433 11865362 ~ 11865765 (-)
G224918 NA non-coding downstream 101128 11863810 ~ 11865070 (-)
G224969 NA non-coding upstream 7475 11985461 ~ 11985691 (-)
G224978 LOC106595066 non-coding upstream 16232 11994218 ~ 11996447 (-)
G224955 NA non-coding upstream 39271 12017257 ~ 12017470 (-)
G224953 NA non-coding upstream 39607 12017593 ~ 12108160 (-)
G224956 NA non-coding upstream 42979 12020965 ~ 12053769 (-)
G224873 NA other downstream 169889 11795890 ~ 11796309 (-)
G224869 NA other downstream 212518 11752851 ~ 11753680 (-)
LOC110509576 LOC106576947 other downstream 224614 11727284 ~ 11741584 (-)
G223969 LOC106605840 other downstream 687570 11275917 ~ 11278628 (-)
G224954 LOC106576536 other upstream 36940 12014926 ~ 12016101 (-)
G224988 LOC106605856 other upstream 93301 12071287 ~ 12081233 (-)
G225099 NA other upstream 358255 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 476402 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 494313 12472299 ~ 12473060 (-)

Expression


Co-expression Network