c1r (c1r/c1s)


Basic Information

Item Value
gene id c1r
gene name c1r/c1s
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11819613 ~ 11825101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124380.1
AGACTTTTAGACTCGTAGTCTAGCATAATACCTCACCATAGGTCTCTATTGGGACACACAGACTGCAGGGAATTCAAGTCTAATACATGTGAGCAATAGCCACACAACAGTAAAACAATAACAACAGAAACATTTGTAGCCAGGACCTTCAACATGGACTGGATCCATCCGTTCATCTGgctgctgtgtgtgtctgtgtgtgagtgttggcGGTTGGCTCGGTCCCTGCCAGCCCTACATGGGGTAGTCCAGTCCCCCCAGTTCCCCCAGCCGTACCCAGCTGCCCTGTCACAACAGTGGGACCTCAGTGTACCTGAGGGCTACCAGCTCCAGCTCAGCTTCACTCACCTGGACATCGAGCCGTCAGCCGACTGCTACTACGACTCCCTCACGGTTTTATATGACAAGAAGGTCCTTGCAAAGTTCTGTGGTCAGGAGAATTCTGCTGATGGACATCACCCAGGCAACCGGCCACTCTTGTCTCCAGGCAACAGGCTCACCCTGGTCCTTCAGACAGACGACACGAACCCTGAGCCACACCAGCACCTCGGCTTCTCTGCCCATTATCAGGCCAAAGaCATAGATGAGTGTTCAGCTCCAGACCCTGAGGATAGTTCTGGTCCACTCTGCTCCCAGATCTGCCACAACACCCTGGGCTCTTACATGTGCTCCTGTCGCCATGGCTACGAGCTCCGCCCTGACCAGCGCACCTGTGTCTtgtcCTGTGGTGGGGGTATATTTGATGAACCAGAGGGGACTCTGTCCAGCCCAGGCTACCCTGACCCATCACCCCACGGCCTGGCCTGTCAGTATGTCATCTCTGTGGAGCCTGGGTTCATCGTCACCCTCAACTTCACTGACAGCTTCCACATAGAGCACATAGGCACCCAGAATGGACCCAGCTGCCTCTACCACTGGCTACAGGTGTCCATCCCCGACAAGGAACCCCAGAAGCTGTGTGGAGTGAAGAGTCCTGGACTAATGCCCACTAACTCTTACACTGTCCAGCTAGACTACCACACTGACTGGGCTGGTCTGAGCCAGGGCTGGAGCCTGCACTACACTActcagaGGGTGCAGTGTGCTTCACCCAGTTCTATCACCAATGGAAGAGTCACCCCAAACTTTCCCCAGTACTATTACAGAGACTACATCCAAGTCCGCTGTGACCCTGGCTACAAACTAATGATGgaTGGCAGAGAGATCAAGAGCTATGCCTCCATGTGTCAAAAGAATGGACAGTGGCACCTCTCCCTCCCTGAGTGCCACATAATTGACTGTGGGGAACCTGAAAAATTGCTGAATGGAGGCGTAAGGTTCATATCTGGCTCTCAGAACCAGCACCTCTCCGTCATTCAGTACTACTGCAATGAACCATTCTACTCACTCCTTGGAGGAGCAACTGtGAGCTACACTTGTGCAGCAGATAGAACATGGAGAGACAACCTTGACACCCCTGTCATTCCCTCATGTATCCCAGTCTGTGGTCAGCCCACAATGTCCATCTCAGGCTTTCAGAGGATCATGGGGGGAGACAAAGCCCCAGACAAAACCATCCCCTGGCAGGTGATGCTCAGTGTGGACGGAGGCAGAGGAGGGGCCATGGTGATCGGGGACCGCTGGATCATGACTGCAGCTCATAACCTGGTGCAGCAGGACAAACTTGTGCTAAAGGAGAAAGTTCGGGTTTTTGTGGGAGACAATGATGCAGAAAAACTTGCAAAGCTCACCCCTCTTGGTGTCacctccctccacccccaccctgaatacaaaaacacagacaGTGCAAACTACAATCATGACATCGCCCTGATAAAACTCCAACAACCACTCACATTCCAGGCTGCCATCATGCCATTGTGTCTGCCACCAGAGAACGCTACTTACAACATTGGCCAGATTGGTATGGTGTCAGGCTTTGGCATCAAAGAAGATGATACCATTGCCAACGATCTCAGGTACATACTCCTACCAGTAGTGAAAGAGGATGAGTGCCAAGACTCTGTCAACCGAGCAAAAGCAGCAACTTCAACAAAGAAGATCCCTGTTCTGACAGTCAACATGTTCTGTGCCGGAGTACCTGAGGGGGGCAAGGACTCCTGTATGGGGGACAGTGGAGGGGCATACGTCTTGAGGGATAGTATTACTAAACGGTTTTGGGCTGCAGGTATTGTCAGTTGGGGTGTGGGTTGTGGGCAGACTGGTAGATATGGAGTGTACACCCGTGTGGCTAAATACATTAGCTGGATCAACAAAACCATGGAGGACAATAAGTAAAATATATAGGCAAAGACAACGAGGGAAAAAGAACAGAAATACAAAAGTATTTTCAATTCAAGTCCTGATTTATGAATCCAAATAAAGCCCAAATGTTTAATC

Function

NR:

description
complement C1r subcomponent precursor

GO:

id name namespace
GO:0006956 complement activation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01330 C1R; complement component 1, r subcomponent

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124380.1 True 2379 mRNA 0.51 13 11819613 11825101

Neighbor

gene id symbol gene type direction distance location
LOC110509592 LOC100136300 coding downstream 7950 11808113 ~ 11811663 (-)
LOC110509520 lag-3 coding downstream 40345 11776055 ~ 11779268 (-)
LOC110509576 LOC106576947 coding downstream 81557 11727284 ~ 11741584 (-)
LOC110509335 NA coding downstream 204775 11613213 ~ 11614838 (-)
fam131bb fam131b coding downstream 270872 11503867 ~ 11548741 (-)
LOC110509614 ret1 coding upstream 33617 11858718 ~ 11862407 (-)
LOC110509511 ptn6 coding upstream 37888 11862989 ~ 11895102 (-)
LOC110509399 LOC106576265 coding upstream 70542 11895643 ~ 11950574 (-)
LOC110509608 LOC105029961 coding upstream 141097 11966198 ~ 11977986 (-)
LOC110509712 LOC106576526 coding upstream 231045 12056146 ~ 12068253 (-)
G224899 NA non-coding downstream 403 11817060 ~ 11819210 (-)
G224870 NA non-coding downstream 11517 11806137 ~ 11808096 (-)
G224874 NA non-coding downstream 37886 11781410 ~ 11781727 (-)
G224869 NA non-coding downstream 65933 11752851 ~ 11753680 (-)
G224868 NA non-coding downstream 66823 11752418 ~ 11752790 (-)
G224918 NA non-coding upstream 38709 11863810 ~ 11865070 (-)
G224919 NA non-coding upstream 40261 11865362 ~ 11865765 (-)
G224920 NA non-coding upstream 40836 11865937 ~ 11866284 (-)
G224931 NA non-coding upstream 65991 11891092 ~ 11897894 (-)
G224938 NA non-coding upstream 94507 11919608 ~ 11923227 (-)
G224873 NA other downstream 23304 11795890 ~ 11796309 (-)
G223969 LOC106605840 other downstream 540985 11275917 ~ 11278628 (-)
G224954 LOC106576536 other upstream 189825 12014926 ~ 12016101 (-)
G224988 LOC106605856 other upstream 246186 12071287 ~ 12081233 (-)
G225099 NA other upstream 511140 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 629287 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 647198 12472299 ~ 12473060 (-)

Expression


Co-expression Network