RNA id: NM_001124380.1


Basic Information

Item Value
RNA id NM_001124380.1
length 2379
RNA type mRNA
GC content 0.51
exon number 13
gene id c1r
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11819613 ~ 11825101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACTTTTAGACTCGTAGTCTAGCATAATACCTCACCATAGGTCTCTATTGGGACACACAGACTGCAGGGAATTCAAGTCTAATACATGTGAGCAATAGCCACACAACAGTAAAACAATAACAACAGAAACATTTGTAGCCAGGACCTTCAACATGGACTGGATCCATCCGTTCATCTGgctgctgtgtgtgtctgtgtgtgagtgttggcGGTTGGCTCGGTCCCTGCCAGCCCTACATGGGGTAGTCCAGTCCCCCCAGTTCCCCCAGCCGTACCCAGCTGCCCTGTCACAACAGTGGGACCTCAGTGTACCTGAGGGCTACCAGCTCCAGCTCAGCTTCACTCACCTGGACATCGAGCCGTCAGCCGACTGCTACTACGACTCCCTCACGGTTTTATATGACAAGAAGGTCCTTGCAAAGTTCTGTGGTCAGGAGAATTCTGCTGATGGACATCACCCAGGCAACCGGCCACTCTTGTCTCCAGGCAACAGGCTCACCCTGGTCCTTCAGACAGACGACACGAACCCTGAGCCACACCAGCACCTCGGCTTCTCTGCCCATTATCAGGCCAAAGaCATAGATGAGTGTTCAGCTCCAGACCCTGAGGATAGTTCTGGTCCACTCTGCTCCCAGATCTGCCACAACACCCTGGGCTCTTACATGTGCTCCTGTCGCCATGGCTACGAGCTCCGCCCTGACCAGCGCACCTGTGTCTtgtcCTGTGGTGGGGGTATATTTGATGAACCAGAGGGGACTCTGTCCAGCCCAGGCTACCCTGACCCATCACCCCACGGCCTGGCCTGTCAGTATGTCATCTCTGTGGAGCCTGGGTTCATCGTCACCCTCAACTTCACTGACAGCTTCCACATAGAGCACATAGGCACCCAGAATGGACCCAGCTGCCTCTACCACTGGCTACAGGTGTCCATCCCCGACAAGGAACCCCAGAAGCTGTGTGGAGTGAAGAGTCCTGGACTAATGCCCACTAACTCTTACACTGTCCAGCTAGACTACCACACTGACTGGGCTGGTCTGAGCCAGGGCTGGAGCCTGCACTACACTActcagaGGGTGCAGTGTGCTTCACCCAGTTCTATCACCAATGGAAGAGTCACCCCAAACTTTCCCCAGTACTATTACAGAGACTACATCCAAGTCCGCTGTGACCCTGGCTACAAACTAATGATGgaTGGCAGAGAGATCAAGAGCTATGCCTCCATGTGTCAAAAGAATGGACAGTGGCACCTCTCCCTCCCTGAGTGCCACATAATTGACTGTGGGGAACCTGAAAAATTGCTGAATGGAGGCGTAAGGTTCATATCTGGCTCTCAGAACCAGCACCTCTCCGTCATTCAGTACTACTGCAATGAACCATTCTACTCACTCCTTGGAGGAGCAACTGtGAGCTACACTTGTGCAGCAGATAGAACATGGAGAGACAACCTTGACACCCCTGTCATTCCCTCATGTATCCCAGTCTGTGGTCAGCCCACAATGTCCATCTCAGGCTTTCAGAGGATCATGGGGGGAGACAAAGCCCCAGACAAAACCATCCCCTGGCAGGTGATGCTCAGTGTGGACGGAGGCAGAGGAGGGGCCATGGTGATCGGGGACCGCTGGATCATGACTGCAGCTCATAACCTGGTGCAGCAGGACAAACTTGTGCTAAAGGAGAAAGTTCGGGTTTTTGTGGGAGACAATGATGCAGAAAAACTTGCAAAGCTCACCCCTCTTGGTGTCacctccctccacccccaccctgaatacaaaaacacagacaGTGCAAACTACAATCATGACATCGCCCTGATAAAACTCCAACAACCACTCACATTCCAGGCTGCCATCATGCCATTGTGTCTGCCACCAGAGAACGCTACTTACAACATTGGCCAGATTGGTATGGTGTCAGGCTTTGGCATCAAAGAAGATGATACCATTGCCAACGATCTCAGGTACATACTCCTACCAGTAGTGAAAGAGGATGAGTGCCAAGACTCTGTCAACCGAGCAAAAGCAGCAACTTCAACAAAGAAGATCCCTGTTCTGACAGTCAACATGTTCTGTGCCGGAGTACCTGAGGGGGGCAAGGACTCCTGTATGGGGGACAGTGGAGGGGCATACGTCTTGAGGGATAGTATTACTAAACGGTTTTGGGCTGCAGGTATTGTCAGTTGGGGTGTGGGTTGTGGGCAGACTGGTAGATATGGAGTGTACACCCGTGTGGCTAAATACATTAGCTGGATCAACAAAACCATGGAGGACAATAAGTAAAATATATAGGCAAAGACAACGAGGGAAAAAGAACAGAAATACAAAAGTATTTTCAATTCAAGTCCTGATTTATGAATCCAAATAAAGCCCAAATGTTTAATC

Function

GO:

id name namespace
GO:0006956 complement activation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01330 C1R; complement component 1, r subcomponent

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257153 lncRNA downstream 403 11817060 ~ 11819210 (-) True G224899
TU257117 lncRNA downstream 11517 11806137 ~ 11808096 (-) True G224870
TU257123 lncRNA downstream 37886 11781410 ~ 11781727 (-) True G224874
TU257110 lncRNA downstream 65933 11752851 ~ 11753680 (-) False G224869
TU257108 lncRNA downstream 66823 11752418 ~ 11752790 (-) True G224868
TU257173 lncRNA upstream 38709 11863810 ~ 11865070 (-) True G224918
TU257174 lncRNA upstream 40261 11865362 ~ 11865765 (-) True G224919
TU257175 lncRNA upstream 40836 11865937 ~ 11866284 (-) True G224920
TU257186 lncRNA upstream 65991 11891092 ~ 11897894 (-) True G224931
TU257195 lncRNA upstream 94507 11919608 ~ 11923227 (-) True G224938
XM_036969135.1 mRNA downstream 7950 11808113 ~ 11811663 (-) False LOC110509592
XM_021590439.2 mRNA downstream 40345 11776055 ~ 11779268 (-) True LOC110509520
XM_036969079.1 mRNA downstream 81557 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA downstream 81557 11727284 ~ 11738056 (-) False LOC110509576
XM_036969073.1 mRNA downstream 81578 11727284 ~ 11738035 (-) False LOC110509576
XM_036969159.1 mRNA upstream 33617 11858718 ~ 11862407 (-) False LOC110509614
XM_036969155.1 mRNA upstream 33636 11858737 ~ 11862403 (-) True LOC110509614
XM_021590419.2 mRNA upstream 37888 11862989 ~ 11889084 (-) False LOC110509511
XM_036969153.1 mRNA upstream 37888 11862989 ~ 11889594 (-) False LOC110509511
XM_021590425.2 mRNA upstream 37888 11862989 ~ 11895102 (-) True LOC110509511
TU257132 other downstream 10267 11808783 ~ 11809346 (-) True LOC110509592
TU257122 other downstream 23304 11795890 ~ 11796309 (-) True G224873
TU257113 other downstream 65933 11752851 ~ 11753680 (-) False G224869
TU257114 other downstream 65933 11752851 ~ 11753680 (-) False G224869
TU257115 other downstream 65933 11752851 ~ 11753680 (-) True G224869
TU257215 other upstream 189825 12014926 ~ 12016101 (-) True G224954
TU257266 other upstream 246186 12071287 ~ 12081233 (-) True G224988
TU257419 other upstream 511140 12336241 ~ 12340966 (-) True G225099
TU257449 other upstream 629287 12454388 ~ 12457791 (-) True G225127
TU257501 other upstream 647198 12472299 ~ 12473060 (-) True G225171

Expression Profile