RNA id: TU257215


Basic Information

Item Value
RNA id TU257215
length 1176
RNA type TUCP
GC content 0.60
exon number 1
gene id G224954
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12014926 ~ 12016101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCTAGCGTGGATCGGAATGTCCACCGGCTTGGGCTCAGGGGAGGGGCTTCTCAAAACAGGAGGTGGGctttcactctcctccctctcctctattggTTCCTCCTTGATGACAGGTGGGGGAGGTGGACCTGTGGACGAATCAGAATGCCCATCTCTAGGAAGTGAGGCGCTACAGCCAGGGGCCGAAGTGCCATTGTTGTTGCCGGGGTTACTAAGAGGTGGGGGTCCTTTTGAGGCGTTTTGAGgtgagagggactgagagagagagttggtatggctgctgccactgctactgttactattGCTGTTAGTCGGGACCAGGTTGTTCCCACTGTTCCCATTGGAGTGGTAGGGGCTGCTGAAGGGGGCGTGGCTGTTCAAAGTGCTGTGAAAAGGTGAGGGCCGACAGCCAGGTGACACACCTGAACCAGGAAGTGACATGTTGGCCCCGGAGGAGGAGCCTGGCGGGTAGGAAGGAAACCCTCCCATCTGATTGGTTGAGGGGCTTAGTAAAGGAGAGAGGGGTGTTGTAGGAGTCTGATTGGAGGAAGAATAATTTGCCGGACGAACGTGATTGGGTCCCAGGCCGGAGGGGGGTTGGGGCTGAGCGAGGGAGGtttggggaggggggagagggggaggaggtggcgGAGGAGGGTAAGGAGCATTCGGAGGGTGTCcatgaggagtggaggaggaagaggagggagaaagagacgggGGTTGGGGGGGACCGCCACGGTTTTGGTAGAGAGACGACTCTCGCTGGTTGGTGTCCCTCTCTCGGTCCCTGTCTCTGGGCTGCTGGGCTGGAAAGTGGGGGTGGGGCAAGTGGGGGATCTGAGGTCCACCTGGGTAGTCTCGGCCCAGGTTTGGAGTCATTCCGGGAGGACTGGGGTACTCACGGGCCGGGCCGGTGGAGGGTGGGCCACCAGGGGGATAGTCCTTGGCCCCAGGAGGGTACTCTCTGTGGAAGTGTTCTGGTCCAGGGGGGGGACTGTGCCTTGTCTGTCCCTGGTCCATCGATGGGGGGTAGTCTCGTTTGGAGGCGCTTTGAGGATGTGGGTgggggggtagggtagggtggcTGGGGTTGTTTTGGGGTGAGGAAGGGGGGTCGCGGTTTAGCATGGGGGCTGCAGGTAACCCACTGGTCGAGCTTGAGGGGTTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257244 lncRNA downstream 18479 11994218 ~ 11996447 (-) True G224978
TU257232 lncRNA downstream 29235 11985461 ~ 11985691 (-) True G224969
TU257143 lncRNA downstream 29834 11927453 ~ 11985092 (-) True G224889
TU257195 lncRNA downstream 91699 11919608 ~ 11923227 (-) True G224938
TU257186 lncRNA downstream 117032 11891092 ~ 11897894 (-) True G224931
TU257216 lncRNA upstream 1156 12017257 ~ 12017470 (-) True G224955
TU257214 lncRNA upstream 1492 12017593 ~ 12108160 (-) True G224953
TU257218 lncRNA upstream 4864 12020965 ~ 12053769 (-) False G224956
TU257219 lncRNA upstream 26385 12042486 ~ 12053769 (-) True G224956
TU257222 lncRNA upstream 29291 12045392 ~ 12049537 (-) True G224959
XM_021590602.2 mRNA downstream 36940 11966198 ~ 11977986 (-) True LOC110509608
XM_036969185.1 mRNA downstream 37121 11966198 ~ 11977805 (-) False LOC110509608
XM_036969174.1 mRNA downstream 64352 11895643 ~ 11950574 (-) True LOC110509399
XM_036969167.1 mRNA downstream 64353 11895643 ~ 11950573 (-) False LOC110509399
XM_036969162.1 mRNA downstream 64354 11895643 ~ 11950572 (-) False LOC110509399
XM_021590774.2 mRNA upstream 40045 12056146 ~ 12068253 (-) True LOC110509712
XM_036969258.1 mRNA upstream 54103 12070204 ~ 12072287 (-) True LOC118945807
XM_021590799.2 mRNA upstream 60983 12077084 ~ 12081473 (-) False LOC110503589
XM_036969271.1 mRNA upstream 60983 12077084 ~ 12086940 (-) False LOC110503589
XM_036969266.1 mRNA upstream 68675 12084776 ~ 12086948 (-) True LOC110503589
TU257132 other downstream 205580 11808783 ~ 11809346 (-) True LOC110509592
TU257122 other downstream 218617 11795890 ~ 11796309 (-) True G224873
TU257113 other downstream 261246 11752851 ~ 11753680 (-) False G224869
TU257114 other downstream 261246 11752851 ~ 11753680 (-) False G224869
TU257115 other downstream 261246 11752851 ~ 11753680 (-) True G224869
TU257266 other upstream 55186 12071287 ~ 12081233 (-) True G224988
TU257419 other upstream 320140 12336241 ~ 12340966 (-) True G225099
TU257449 other upstream 438287 12454388 ~ 12457791 (-) True G225127
TU257501 other upstream 456198 12472299 ~ 12473060 (-) True G225171
TU258665 other upstream 1050772 13066873 ~ 13067357 (-) True G226124

Expression Profile