RNA id: TU257244


Basic Information

Item Value
RNA id TU257244
length 516
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G224978
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11994218 ~ 11996447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacatacacacacacctgggtaGTCATTGACGAAGCCCTGGTACATGTCGCAGAGCTCTTGGGCGCTGATGTGGCGGTCTGCGTTGGGCGGAGACTTGAAGTCCAGGTCGTACTTGCCCTCTTTGTAGAACTCAGAGGCTGCCACGTCCATCCCGATCACCACCTTGTCTGTGAAACCTGCCTTCTCAATGGCTGTCTTGATCAGCTCCAGGGctTCAGTGTTCTCCAGTATGTTTGGGGCGAACCCCCCCTCGTCCCCCACGTTGGTGGCGTTCTGGCCATACTTCTCCTTGATCACTTCCCTCAGCGTCTGGTACAGCTCTGCCCCCACACGCACAGCATCCTTGAAAGACTCCGCCCCTACAGGAAGTACCATGAACTCCTGCATGGCCAGCTTGTTGCCCGCGTGAGAGCCCCCGTTGATAACGTTAAAGGCCTGAGGGAAAGATGgaccaggggaggagaggagagggagacatacATCAGTATTTGTCAATATACagtattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257232 lncRNA downstream 8527 11985461 ~ 11985691 (-) True G224969
TU257143 lncRNA downstream 9126 11927453 ~ 11985092 (-) True G224889
TU257195 lncRNA downstream 70991 11919608 ~ 11923227 (-) True G224938
TU257186 lncRNA downstream 96324 11891092 ~ 11897894 (-) True G224931
TU257175 lncRNA downstream 127934 11865937 ~ 11866284 (-) True G224920
TU257216 lncRNA upstream 20810 12017257 ~ 12017470 (-) True G224955
TU257214 lncRNA upstream 21146 12017593 ~ 12108160 (-) True G224953
TU257218 lncRNA upstream 24518 12020965 ~ 12053769 (-) False G224956
TU257219 lncRNA upstream 46039 12042486 ~ 12053769 (-) True G224956
TU257222 lncRNA upstream 48945 12045392 ~ 12049537 (-) True G224959
XM_021590602.2 mRNA downstream 16232 11966198 ~ 11977986 (-) True LOC110509608
XM_036969185.1 mRNA downstream 16413 11966198 ~ 11977805 (-) False LOC110509608
XM_036969174.1 mRNA downstream 43644 11895643 ~ 11950574 (-) True LOC110509399
XM_036969167.1 mRNA downstream 43645 11895643 ~ 11950573 (-) False LOC110509399
XM_036969169.1 mRNA downstream 43646 11895643 ~ 11950572 (-) False LOC110509399
XM_021590774.2 mRNA upstream 59699 12056146 ~ 12068253 (-) True LOC110509712
XM_036969258.1 mRNA upstream 73757 12070204 ~ 12072287 (-) True LOC118945807
XM_021590799.2 mRNA upstream 80637 12077084 ~ 12081473 (-) False LOC110503589
XM_036969271.1 mRNA upstream 80637 12077084 ~ 12086940 (-) False LOC110503589
XM_036969266.1 mRNA upstream 88329 12084776 ~ 12086948 (-) True LOC110503589
TU257132 other downstream 184872 11808783 ~ 11809346 (-) True LOC110509592
TU257122 other downstream 197909 11795890 ~ 11796309 (-) True G224873
TU257113 other downstream 240538 11752851 ~ 11753680 (-) False G224869
TU257215 other upstream 18479 12014926 ~ 12016101 (-) True G224954
TU257266 other upstream 74840 12071287 ~ 12081233 (-) True G224988
TU257419 other upstream 339794 12336241 ~ 12340966 (-) True G225099
TU257449 other upstream 457941 12454388 ~ 12457791 (-) True G225127
TU257501 other upstream 475852 12472299 ~ 12473060 (-) True G225171

Expression Profile