RNA id: XM_036969174.1


Basic Information

Item Value
RNA id XM_036969174.1
length 7370
RNA type mRNA
GC content 0.53
exon number 41
gene id LOC110509399
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11895643 ~ 11950574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaTGTTAGCTAAGCTCTGCTAGCCACTGAggctgggggagagaagggggacgGAGAGTGTGCAACCTGTTTTGCAGGGTCATTAACGACATATTTTACTGGATATTGTTGCTCATTAATTTATATTAAAGACTAATACCATTGCTGAGAGACAATTATTACACGAAGGAAACCCATCTCTAACAGGGACTACACGACCCTCCCCTCCCCAGGACACCCCCGTTCCATTCTCCACCACCCACACGTCATTTGCCCTCCTCCCTCACCAGATCGGACAGGGTTCGGTGGAGGGATTAGCTCGCTTTTAATTTAAATTCATTATTATTGAAATATGTCGGGAAGCGAGGACGAGAGGGAAGACTTGGAACCTACGGCACTTGCACATGACGAGGAGGAACCAGAAGAGGCTGTGTCTGACGTCGAGGTCCCTGCCAagtcaaagaagaagaagaaagccAAGAAGAGCCTTGAGAGCAGGATCAGCAAGAGACCAAGACCTGTCAGAGAGGAGGTGCCAGTCAGCTCACCAGAACCCTTCATAGCAGTAGAGCAAGCAgcgagggaggaggaagagggaggaggaggtagagccAGGTCAGAAAGCGAGGGAAGTGATTACGCCCCGAGGGGGAAGAAGAAGAAGCGCTCCAGCTCCTCCAAAGAcaagaagaagggaggagggacgagtggagagaaggagaaaggaggaggaggctcATCCAGCTCCAAGAGCAAACGCAAAGAACCAGAACTAGAGAAAGATgaggatgaagatgatgatgaagatagCCAGGAGCCCAAGAGCTCGACTCAGCTGCTGGAGGACTGGGGCATGAAAGACATCGACCACGTCTTCACTCAGAAGGActacaccaccatcaccaacTACAAGGCCTTCAGCCAGTTTGTCAGACCCCTCATCGCAGCCAAGAACCCCAAGATCGCTGTGTCCAGGATGATGACTCTGATGATGGCCAAGTGGAGGGAGTTCAGCACCAACAACCCTCTGAAGGGCTGTGCCAGTGCCAACGCAGCCCTGGCAGCTGCCAACGTGGCTGCGGCCGTggaaagcatggtggtggcagggaCAGAGGCAGGAGGGGATACAGGGGCGGGGGGTAGTGCTGCTAAAGACTCCCCTCCAGCTACACCCGCTTCCGTACCTGTAGCTGTACCCGCACCCCCACTCCGcaaggccaagaccaaagaggGCAAAGGCCCCAATGCTCGCAGGAGGTCCAAACCCAACCCTAAGGCTGCCCCCAAGCCCAAAGCCAAGAAGGTGGCTCCGCTCAAGATCAAACTGGGAGGCTTCAACAGCAAGAGGAAGAGATCCTCGAGTGAGGAGGATGAGCTTGACGTGGAGAGTGACTTTGACGACGGGACCTTTGAAGTGTCGGACGGCTCCAACAGCCACAGCAGCCGCTCCAAGAAGAAGGCCAAGACcgccaagaagaagaagaaagTTGAGGAGGATGGTGACGGCTATGAGACAGACCACCAGGACTACTGTGAGGTGTGCCAGCAGGGAGGGGAGATCATCCTGTGTGACACCTGTCCCAGGGCCTACCACATGGTCTGTCTGGACCCCGACATGGAGAAGGCCCCTGAGGGCAAGTGGAGCTGCCCCCACTGTgaGAAAGAGGGGATCCAGTGGGAGGCCAGAGAGGAGCTgtctgagggagagggggaggacgaggaggtggggagggatgagggatgggtagaggaggaggatgaccaTCACATAGAGTTCTGCAGGGTGTGTAAGGATGGAGGAGAGCTGCTGTGCTGTGACACCTGTACCTCCTCCTACCACATCCACTGTCTCAACCCCCCCCTCCCCGAGATACCCAACGGGGAATGGATCTGCCCACGCTGCATGTGCCCAGGCATGAAGGGTAAAGTCCAGAAGGTTCTGACCTGGAAGTGGGGTGAACCTCCACCCCCTACACCTGTGCCCCGCCCCCTGGACCTCCCAGCTGAGGCTCCGGACCCTGTCCCATTGGCCGGCCGACCAGAGAGGCAGTTCTTTGTCAAGTGGTGCAACATGTCTTACTGGCACTGTTCCTGGGTTCAAGAGCTACAGttGGAGCTGAACTGCCAGGTGATGTTCCGTAACtaccagaggaagacagacatgGACGAGCCCCCGCTGGTGGACTTCGGAGGGGAGGGGGACGATGACAAGAGCACTAAGAGGAAGAACAAGGACCCCCTGTATGTTCACATGGAGGAGGAGTTCTACCGTTACGGAGTCAAGATGGAGTGGCTCATGATCCACCGCATCCTCAACCACAGtgtggaTAAGAGGAACAACGTGCACTACCTGATCAAGTGGAGGGATCTGGCCTACGACCAGGCCTCCTGGGAGAGTGAGGAGATGGACATCCCAGAGTACGACCAATACAAGCAGACCTACTGGAAccacagagagttGATGTTGGGAGATGAGGGCAGGCCTGGTAAGAAGCTGAAGAAGATAGCTAAAGTGAAGAAGAGTGAGAAACCCCCTGCTAACCCTGTGGTGGATCCCACCATCAAGTTTGACCATCAGCCAGACTACCTGGACACTACAGGGGGAACGCTGCACCCCTACCAGCTGGAGGGTCTCAACTGGCTGCGTTTCTCCTGGGCTCAGGCCACTGACACTATACTGGCTGATGAGATGGGTCTAGGCAAGACTGTCCAGACCGCTGTCTTCCTCTACTCACTCTACAAAGAGGGTCATTCAAAGGGCCCGTTCCTGGTGAGCGCCCCCCTGTCCACCATCATTAACTgggagagagagtttgagttGTGGGCCCCGGACATGTACGTGGTTACCTACGTAGGAGACAAGGACAGCAGAGCCGTCATCAGAGAAAACGAGTTCTCCTTCGAGGGTAATGCCATCCGGGGGGGCAAGAAGGCCTCTAAGATGAAGAAAGACTCATCGGTGAAGTTCCATGTCCTGCTGACGTCCTATGAGCTGATCACTATAGACCAGGCTGTGCTGGGCTCCATAGACTGGGCCTGTCTGGTGGTGGATGAGGCACACAGGCTGAAGAACAACCAGTCAAAGttcTTTAGGATTCTGAATAACTACCCTCTCCAGCACAAGCTGCTGCTGACTGGTACACCTCTACAGAACAACCTGGAGGAACTCTTCCACCTGCTCAACTTCCTCACCCCAGTGAGATTCAATAACCTAGAGGGATTCCTGGAAGAGTTTGCTGACATCGCCAAAGAAGACCAGATCAAGAAGTTGCATGACATGCTGGGACCACACATGCTCAGGAGACTGAAGGCCGACGTCTTCAAACACATGCCCACCAAAACAGAGCTCATCCTACGAGTGGAGCTCAGCCCCATGCAGAAGAAGTACTACAAGTTCATCTTGACACGTAACTTTGACGCCCTGAACACCCGCGGAGGAGGAAACCAAGTGTCCCTGCTCAACGTGGTCATGGACCTCAAGAAGTGTTGCAACCACCCCTACCTCTTTCCCGGAGCCGCAATGGAGGCGCCAAAGATTCCAAACGGAATGTACGAGGGCAGTGCCCTCACAAGGGCTTCTGGGAAACTGACTCTGCTGCAAAAGATGATGGTTAAACTCAAGGAGGGAGGACATAGAGTGCTCGTCTTctctcagATGACTAAGATGTTGGACCTGCTGGAGGACTTCCTGGAGAACGAGGGTTATAAGTACGAGAGGATTGATGGAGGTGTAACGGGGGGCATGAGACAAGAGGCCATCGACCGCTTCaacgctcctGGCGCCCCTCAGTTTGCCTTCCTGCTCTCTACCAGAGCGGGAGGTTTGGGCATCAATCTGGCAACCGCCGATACTGTCGTCATCTACGACTCCGACTGGAACCCCCACAACGAcatccaggcATTCAGCAGAGCTCACAGGATTGGTCAGAATAAGAAGGTTATGATCTATCGCTTCGTTACCAAGGCGTCTGTGGAAGAGCGGATCACTCAGGTGGCTAAGAAGAAGATGATGTTGACCCACCTGGTGGTACGTCCTGGGCTGGGCAGTAAGACAGGTTCCATGTCTAAACAGGAGCTGGATGACATCCTCAAGTTTGGAACAGAGGAGCTGTTCAAGGACGAGCTGGGAGAGGGGGACAACAAGGAGGATGACAGCCAGGTCATCCATTATGATGACAAGGCCATAGACAGACTGCTGGACAGGAACCAGGAGTCAGAGTCCACTGAGGACACAGAGATCCAGAGCATGAACGAGTACCTCAGCTCCTTCAAAGTGGCCCAATACGTCGTcaaggacgaggaggaggaggaggaggtgcagcgtgaggtgaTTAAACAGGAGGAGTCAGTAGACCCAGACTACTGGGAGAAACTGCTGAGACACCACTatgagcagcagcaggaggaccTGGCCCGTAACctgggaaagggaaagaggaCCCGCAAGCCTGTGAACTACAACGACGGCTCTCAGGAGGAACGAGATTGGCAGGAGGATCAGTCTGACAACAACTCAGATTACTCTGTGGCctcagaggagggagatgaggactTTGATGAGCGATCAGAAGCCAACTCCCGCAGGCCAAGCCGCAAGGGGCTGAGGAATGAAAGGGACAAACCGCTGCCACCCCTGTTGGCCAGAGTGGGAGGCAACATTGAGgTGTTGGGCTTCAATGCGCGCCAGAGGAAGGCATTCCTGAATGCAGTGATGCGCTATGGGATGCCTCCTCAGGATGCCTTCACCACCCAGTGGCTGGTCAGAGACCTCAGGGGGAAGTCTGAGAAAGAGTTCAAggcATATGTCTCCCTCTTCATGCGTCATCTCTGTGAGCCGGGGGCTGACGGAGCGGAGACCTTCGCTGACGGGGTTCCACGGGAGGGGTTGTCACGACAACACGTCCTTACTCGCATCGGCGTGATGTCATTGATCAGGAAGAAAGTGCAGGAGTTTGAGCATGTGAACGGCCAGTGGTCCATGCCCTGGATGATGGAgctggaggagaacaggaggctGGCAGCCATCGCTGCTGGAGAGGATGTCAAAACACCATCTACTGGAACCCCCGCTGACACACAGCCCAACACCCCtgccccagAGGACCTCACTAAGTCTGAAGACACTGGCAAGGAGACGGAGGTAAataaggagggagaggaagaaaaggaCGGCAGGGTGCACAGCAAGTCAGAAGACCCAGAGATTATTGAAATCCCAGACGAGATGGAAAAACGCTCTGAAAGgaaagaggcagagggagagtccTCCACCACAGAGAACGACAAAGAAAAGAACAAAGACACAGAAGAGAAGGACGATAAAGAGACTGAAGAGAAGGAAACCAAGGAAACCCAAAAGGAGACGGCAGACAAGGAGAACAATTCCCCCACTGAGGTCAAAGGTGAAGGGTCAGAGGCCACAGCAGTGTCACAGGAGGCCAAGCCTAAAGTGGAGGAGAGCAAAGAGGAGAAGATGGACCCCAGTCCTCTTGCAGAGGACAAGAAAGAGCAAAAAGAGGAGAAAGATGGTTTGAAGACCGAGGAGTCTGGCAAGCTGCAGAATGGAGAGAACAGTAAAGAAGGAGTGGCAGCAGCAGGGATGGCGGTGAATGTGagtgaggagaagaagaaggctACCAAGCAGAGGTTCATGTTCAACATCGCAGACGGAGGattcacagagctcCACTCTCTGTGGCAGAACGAGGAGAGGGCGGCGACCGTCACCAAGAAGACATTTGAGATCTGGCATCGTCGCCATGACTACTGGCTGCTGGCCGGCATCATACAACACGGTTACGCTCGCTGGCAGGACGTGCAGAGCGACGTGAAGTATGCTATCCTCAACGAGCCCTTCAAGGGGGAGATGAGTCGAGGAAACTTCCTGGAGATCAAGAACAAGTTCTTGGCCAGAAGGTTTAAGTTGTTGGAGCAGGCGTTGGTGATTGAGGAGCAGCTTCGCAGGGCAGCCTACCTGAACATGTCTGAGGACCCGGCCCACCCCTCCATGGCCCTCAACACCCGCTTCAGTGAGGTGGAGTGTCTGGCTGAGTCCCACCAACACCTCAGCAAGGAGTCCATGTCAGGGAACAAGCCTGCTAACGCAGTACTGCACAAAGttcTCAAACAGCTTGAGGAGCTTCTGAGTGACATGAAGGCCGACGTCACCCGTCTCCCGGCAACCATCGCCCGTATACCACCCGTCGCCGTGAGGCTGCAGATGTCGGAGAGGAACATCCTCAGCCGATTGGCCAGCCGCGGGTCCGAGGTCACCGGCCAGAGCCAATCACAGACCACGCAGCAGATGCAGGTGCCACGCTGACCAATTCCGCCAGTCCTCCCTAAGGCGTTCTCCCACCCGTGTTTTGGAATTGGAGAGTGACCCTTATCTCACCCCGCTCTGCACCTTTCTTGTCCCCAAACCAAATCTCACACTCTGGACAGTAGAGTAAGGTCTCTACCCACCAACACATCTTCTCTGGACACAGCAGACTAAAAATGTTCTGCTTCCTCTTCACCCAAAGACACCTGTAGGAACACAGTCTCTGTTCTCCACTGGGAACAccttatctacagtatctacctaatGAACTGCAGCacagtctctgtgtctgtctgttatgtGTCTAACTTTCACACAGAGGTTGTTTTCACTGTATCTTTCCCCAAGCCTGTCTCTAAAATAGACAGCAGTGTACCTGGCTCTGTCCCATAGAATTAGAATGGGTAAAATGGACTTTTCCACTTCAAGTAAAGGTTCTATAATATGTGGACTCGTTGTTCTATGGGTGTGCAGAATTAAATTTGATATGCAACATGTACAATTCAATTCGGTAAATATGAAATCATGTGGAATTTAGAACTATGTCTGTTCTGCCCATTCCATTTCTGGGTGTGTACCTCttctgagtgtatgtgtgtgtgtctgtgtgtgtaggtgggtaCACTGCTCTATACTTCCCACAGAGAGACTGTTAGTAACTATCAACTGATGAGGATGCTTTAGTAGAATAATATTGGTTCTGTTTTACActcctgcccctccccctcttcacTGCTCCCTTCACCTGTAAACTCAGGTGGTCCATAACACTAGCCTGTTATTGGCTCTCCCCGCTCCTCAGCCATGCCCCGTCCCGCAGCTCTCCATTCCTGAGCGATTGTGTCACAAATGTTCCCGGAGGCCTCGCCCCCTTTTTGCCCAAATAAGGATATGCAATAGCTCCACTAGTGTCGACACGGGGCTGCATTGAGAATGATGGCAATCTCTAAATTAATTAAATGTCTTAGTCTAATGTTTTGTTCTTTTACATTTTGGAATATTATTATGGTTGTTTTTATCGTTACAGTTTCTTCTGAGAACTCCAATAAAAAGGGTAACAGTTTGTGAA

Function

GO: NA

KEGG:

id description
K11643 CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257175 lncRNA downstream 29359 11865937 ~ 11866284 (-) True G224920
TU257174 lncRNA downstream 29878 11865362 ~ 11865765 (-) True G224919
TU257173 lncRNA downstream 30573 11863810 ~ 11865070 (-) True G224918
TU257153 lncRNA downstream 76433 11817060 ~ 11819210 (-) True G224899
TU257117 lncRNA downstream 87547 11806137 ~ 11808096 (-) True G224870
TU257232 lncRNA upstream 34887 11985461 ~ 11985691 (-) True G224969
TU257244 lncRNA upstream 43644 11994218 ~ 11996447 (-) True G224978
TU257216 lncRNA upstream 66683 12017257 ~ 12017470 (-) True G224955
TU257214 lncRNA upstream 67019 12017593 ~ 12108160 (-) True G224953
TU257218 lncRNA upstream 70391 12020965 ~ 12053769 (-) False G224956
XM_021590425.2 mRNA downstream 541 11862989 ~ 11895102 (-) True LOC110509511
XM_036969153.1 mRNA downstream 6049 11862989 ~ 11889594 (-) False LOC110509511
XM_021590419.2 mRNA downstream 6559 11862989 ~ 11889084 (-) False LOC110509511
XM_036969159.1 mRNA downstream 33236 11858718 ~ 11862407 (-) False LOC110509614
XM_036969185.1 mRNA upstream 15624 11966198 ~ 11977805 (-) False LOC110509608
XM_021590602.2 mRNA upstream 15624 11966198 ~ 11977986 (-) True LOC110509608
XM_021590774.2 mRNA upstream 105572 12056146 ~ 12068253 (-) True LOC110509712
XM_036969258.1 mRNA upstream 119630 12070204 ~ 12072287 (-) True LOC118945807
XM_021590799.2 mRNA upstream 126510 12077084 ~ 12081473 (-) False LOC110503589
TU257132 other downstream 86297 11808783 ~ 11809346 (-) True LOC110509592
TU257122 other downstream 99334 11795890 ~ 11796309 (-) True G224873
TU257113 other downstream 141963 11752851 ~ 11753680 (-) False G224869
TU257215 other upstream 64352 12014926 ~ 12016101 (-) True G224954
TU257266 other upstream 120713 12071287 ~ 12081233 (-) True G224988
TU257419 other upstream 385667 12336241 ~ 12340966 (-) True G225099
TU257449 other upstream 503814 12454388 ~ 12457791 (-) True G225127
TU257501 other upstream 521725 12472299 ~ 12473060 (-) True G225171

Expression Profile