RNA id: XM_036969258.1


Basic Information

Item Value
RNA id XM_036969258.1
length 1954
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118945807
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12070204 ~ 12072287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACAGCGCTCTTTGTCTTCTTGACTTTGTTTACGTTGGTAGCTAGCTGGCTGATTTAGCTGGCTGACAGCTTTCCTAattaaaaaatgtctaaaatggATTTCTTGAGAGTGTTTCTCAACCAGAAATTGATAGCGGCAGCTGAAGAGATATTTGGTGTCGTTGAAGAAACGATAGCAGAGTACCAGGAAGAGGTTTCTCACACAAAGGAGGAGAACAGGCGTCTACGGAGCATGCTGGATATTCGTTCTAAGCCACAGATCAAGTTACATAGACGAGCAGACCTCCAGCAGCTCACTGTCGCTGTGTCTGATGAGCAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCACAACCCACACGGATGAAAGATGAACAGGGTGAACCAAGAACCAGTCAGGAGGATGAGAATAATTTCAATGAGTTTATCAATTCTTACGGCTGTGTATCAAGTGGCTATTATCAGGACCCAACTCAGCCCTCACATGGAGAGAGATACTCTCTACCCAGCACCTCAACTGAACAGATCAAAACAGAACCTTATGTAGAAGACTATGGTGTATCAGAACCAATCAGAGAGCCCCAGCCCTTCTCTGCAGTAGATACTGAGTGTTCTGCAGCTCAGAGTGAAAACAGAGGACATATTGACAGGATGGAGTGTGGAGGACCTCTGTCAGGTCTAATGTTAAAGCCACTCAAATCAAAGAGAACAAAGACAGTAAAAGGACAAAGTTCTCATAGTGTTAAGGACAGGAAATTGAACCATCTAAAATCACACTCGAGACCCAGTGTAAGCTGGGATGCTGCTCCTAGTTGTAAGGTATGTGGAAAGCAATTTGACTCCATGGCGTCTTTATTAAATCATGTGCAAGCGCACACACAGGATAAAGAACATCTTTGTGGTGTGTGTGGAAAATTCTGTCAGTCTACAGAAAATATGATGGATCACCTACAAACTCACATTGGAGCAAAGTGTTGTCATATTTGTGGTAAATATTTTGCTTGGGATACTTTCCTGAAAAGGCATTTGAGGagtcatacaggggagaagccgtTTCACTGTCAAGATTGTGGCAAAGGATTTACTCAGCGTGGACACCTAAACTTACATATGAGGagccacacaggggagaaaccacaTCAATGCCAAGATTGTGGCAAATGTTTCAGCCAGAATACATCTCTGATAGTGCACATGAGgactcacacaggggagaagccatacaTGTGTCCTGTGTGTAGAAAATGCTTTACCACATCAAGTATGTTGAAGAAGCATCAGACAGCTCACAAACATATAGGTGCCATGAATGTGGCCAATGCCACAATGGATTCAGACCATACAGAGCCACGTGAAGAGGGTTTACAGGAAGGAGAACAAATGACTGTGCCCTGTGTGGGGGGAGCGAATCGGACAGCAGACAGAGATGTGATAGGAGAATCAGGACTTAGCCCTCCTCGGGACACTGCTCTCTGATTAATATCATGTTCTAACAGAGAGCAGTTAGTGGGTTTCTGAGTAACAGGAGTCCCTGCCCATTAGTTATAGGATGACACAGAGGACATGGtgagatccactgttatgtctgTATATAAACCTTGCATTGGTCTTGAGAGTAATATGTCACAATATATCTGCCCTGATGTTGCAAACAGACTAGTTTTCAGAATGTTTGTTCCCTTCTGTTTAATGTTCTGTTTAATGTTTAAGATCTTCCGTACACCAAATGTCATACTTACCTCTGAGCCTAATGCCAAAATCCACCAAGggggaaaaatacattttaatgtgTATTTACATGTATAGAGAATTGGTATGATACAGTTATGCTATGTTCAATGGGATCTAAATATACCACCTGAAATGAGAGCTGCTTCTTTCAACCAACCCAGATATTGTACATTCCCAGACATCCATTAAGTACTACAGAATAAATGGCTGATAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257218 lncRNA downstream 16435 12020965 ~ 12053769 (-) False G224956
TU257219 lncRNA downstream 16435 12042486 ~ 12053769 (-) True G224956
TU257222 lncRNA downstream 20667 12045392 ~ 12049537 (-) True G224959
TU257216 lncRNA downstream 52734 12017257 ~ 12017470 (-) True G224955
TU257244 lncRNA downstream 73757 11994218 ~ 11996447 (-) True G224978
TU257313 lncRNA upstream 64164 12136451 ~ 12139918 (-) True G225019
TU257330 lncRNA upstream 91436 12163723 ~ 12168508 (-) False G225032
TU257333 lncRNA upstream 91436 12163723 ~ 12169705 (-) True G225032
TU257350 lncRNA upstream 155271 12227558 ~ 12227877 (-) True G225048
TU257368 lncRNA upstream 194088 12266375 ~ 12308268 (-) True G225061
XM_021590774.2 mRNA downstream 1951 12056146 ~ 12068253 (-) True LOC110509712
XM_021590602.2 mRNA downstream 92218 11966198 ~ 11977986 (-) True LOC110509608
XM_036969185.1 mRNA downstream 92399 11966198 ~ 11977805 (-) False LOC110509608
XM_036969174.1 mRNA downstream 119630 11895643 ~ 11950574 (-) True LOC110509399
XM_036969167.1 mRNA downstream 119631 11895643 ~ 11950573 (-) False LOC110509399
XM_021590799.2 mRNA upstream 4797 12077084 ~ 12081473 (-) False LOC110503589
XM_036969271.1 mRNA upstream 4797 12077084 ~ 12086940 (-) False LOC110503589
XM_036969266.1 mRNA upstream 12489 12084776 ~ 12086948 (-) True LOC110503589
XM_021590786.2 mRNA upstream 14887 12087174 ~ 12089471 (-) True LOC110509720
XM_021590844.2 mRNA upstream 39096 12111383 ~ 12112865 (-) True LOC110509756
TU257215 other downstream 54103 12014926 ~ 12016101 (-) True G224954
TU257132 other downstream 260858 11808783 ~ 11809346 (-) True LOC110509592
TU257122 other downstream 273895 11795890 ~ 11796309 (-) True G224873
TU257114 other downstream 316524 11752851 ~ 11753680 (-) False G224869
TU257419 other upstream 263954 12336241 ~ 12340966 (-) True G225099
TU257449 other upstream 382101 12454388 ~ 12457791 (-) True G225127
TU257501 other upstream 400012 12472299 ~ 12473060 (-) True G225171
TU258665 other upstream 994586 13066873 ~ 13067357 (-) True G226124
TU258728 other upstream 1104891 13177178 ~ 13180272 (-) True G226187

Expression Profile