RNA id: XM_021590844.2


Basic Information

Item Value
RNA id XM_021590844.2
length 1114
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110509756
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12111383 ~ 12112865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATACCATCCCAAAGAGAAGGTGCCTGTTCCCAACCCTGATGTCTGAGCCAGACCCAGTACCTCTCTCTGATCCAGCAGAGACCAGCGAGCCCCAGCAGAAGGCAGGAATCTTCAACCCACCTGCCACAAAGCGACTGAAGAGGACCAGAAAGTTGGAGCCAGCCCCAGGCCTTTTCTCTGAGCCACCAGAGAGCATGAAGTCAAAGGAAATGGAGATCCCAGGTCCACCTGCCACAAAGAGACTGAAGAGGACCAGGAAGTTGGAGCCAACTCCAGCCCCTCTCTCTGAACCTCCAGACACCAGCAAgtcaaagaagaagaaaataatCCCTGGCCCACCTGCCAGTCAGCAAGTGAAGAGATCCAGATGTCCTCCCAGCCCCTGGACCCCTAACCTAGTGGAGATTAGACGTAGGACACCTACAGCCAGACCTCCTACCTGTGAGATAGGTGTAACTACGTTTACCTTGAGATCGAAGGTAGCGACAGGCCCTACCTTGAAGTCAGGTGTAGTCACATCCCCATCTAGCGGTGAAGCCTTTTCCACATCCCCTGAGAGGAAGAAGAACAGGAAGAGGGCCAAGTGCATTGGTGCGGCCGTTCCCGCCCCCCCtgagaggaagatgaagaagaggGCGAGGTGCTGCCCTGTCCCGCTGAACAACcccttgtctgtctgtcggtcgcaGAGGGCCACCCAGGGCAGGAAGGCCTGTGTGTGGTGTAAACAGGAGAAAGAGTGGATGAAGACCATCTGGCAGTGTGAGGCCTGTCAGGTGGCCCTCTGTCTCATACCGGGCAGAAACTGCTTCAGGGCCTGGCACAAGACTCACAAGTGGAACGAGGAAGTCAtcttcagtctgttttcttaAATGTTGTCAAATATGTGGGTCTGGAGCCTCAGCATGAGATATTAATGGTTTGTGGTCAAAAAAGCCCACTTTCAGTTCCTAGTTCATATGGTTTTAGTATAATTCAGGCATACATGCATTAAATAAGAAATATTTCCTTTGTGGGTGTTTTTGCAAGAAAAGGAAGTTGAAAAGTTTGCTACATTTTCTTAAAAGCCCTTTTCCTCATGTTGTTTAAGTTGACATATTAAATACATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257214 lncRNA downstream 3223 12017593 ~ 12108160 (-) True G224953
TU257218 lncRNA downstream 57614 12020965 ~ 12053769 (-) False G224956
TU257219 lncRNA downstream 57614 12042486 ~ 12053769 (-) True G224956
TU257222 lncRNA downstream 61846 12045392 ~ 12049537 (-) True G224959
TU257216 lncRNA downstream 93913 12017257 ~ 12017470 (-) True G224955
TU257313 lncRNA upstream 23586 12136451 ~ 12139918 (-) True G225019
TU257330 lncRNA upstream 50858 12163723 ~ 12168508 (-) False G225032
TU257333 lncRNA upstream 50858 12163723 ~ 12169705 (-) True G225032
TU257350 lncRNA upstream 114693 12227558 ~ 12227877 (-) True G225048
TU257368 lncRNA upstream 153510 12266375 ~ 12308268 (-) True G225061
XM_021590786.2 mRNA downstream 21912 12087174 ~ 12089471 (-) True LOC110509720
XM_036969266.1 mRNA downstream 24435 12084776 ~ 12086948 (-) True LOC110503589
XM_036969271.1 mRNA downstream 24443 12077084 ~ 12086940 (-) False LOC110503589
XM_021590799.2 mRNA downstream 29910 12077084 ~ 12081473 (-) False LOC110503589
XM_036969258.1 mRNA downstream 39096 12070204 ~ 12072287 (-) True LOC118945807
trnav-uac mRNA upstream 17306 12130171 ~ 12130246 (-) True trnav-uac
XM_021590919.2 mRNA upstream 319304 12432169 ~ 12438782 (-) True LOC110509802
LOC110503604 mRNA upstream 557624 12670489 ~ 12673805 (-) True LOC110503604
XM_021584068.2 mRNA upstream 575614 12688479 ~ 12690873 (-) False LOC110505096
XM_021584076.2 mRNA upstream 575614 12688479 ~ 12690874 (-) True LOC110505096
TU257266 other downstream 30150 12071287 ~ 12081233 (-) True G224988
TU257215 other downstream 95282 12014926 ~ 12016101 (-) True G224954
TU257132 other downstream 302037 11808783 ~ 11809346 (-) True LOC110509592
TU257122 other downstream 315074 11795890 ~ 11796309 (-) True G224873
TU257115 other downstream 357703 11752851 ~ 11753680 (-) True G224869
TU257419 other upstream 223376 12336241 ~ 12340966 (-) True G225099
TU257449 other upstream 341523 12454388 ~ 12457791 (-) True G225127
TU257501 other upstream 359434 12472299 ~ 12473060 (-) True G225171
TU258665 other upstream 954008 13066873 ~ 13067357 (-) True G226124
TU258728 other upstream 1064313 13177178 ~ 13180272 (-) True G226187

Expression Profile