RNA id: XM_021590774.2


Basic Information

Item Value
RNA id XM_021590774.2
length 3675
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110509712
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12056146 ~ 12068253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATCAGAGGGCATCACAAACGATGCACTACACAGAGGGGCATGCGCTTCTGTGTTTATCTTCTGCAGAAGTACAGGCTAATTTCGTATGGaggaaaataaacaataaaaatgtctaaaataGAGTTGTTGAGAGTTTCTCAACCATAAATTAACAGCGGCTGCTGAGGAGATATTTGGGGTCGTTGAAAAAACGATAGCAGAGTACCAGGTAGACGTTGTTCGTATGAAAGAGGACAACAAACGTCTTCTTGGGCTGTTGATGTTGCATAGAGGAGTGTCAGACTGCCATCGGCAGGCTGAAGCTACTATCACTTTGGTGCAGGTTGCCCCAGAGCAGCAGCAGTTATGTACTCAAGAGTGGGGCCTCCATCTAAGACAGGAGGACCCAGAGCCCACAGTGTCACTATGTAAAGAGGAAGACGATACCCACTGGATCAGTGAGGTTGAAGAGCACATTCAAAGGCTGGAGTCTGATCCCAAAGACCCAGACCAAGTATCCACTTCTGAAGATTTCACATTCCAAATGGAGACAAGGGTCAGTAAACGCAGCCAACAAACTGAAAGTTATCCTCAACGACAACAGAATAGAGAAAGCGATTCTGCCCTCTCAACCTGACTCACTGAATGAGCTGATATCAACGCTCAAGGAGAAACTGCATCTGAAGTTTGATTTCAGTCTTCTTTATGAAGACCCTGATGTAAACAATGAGCTCTTCAACTTAGAGACCATTGAAGACTTGCCTTCTCCTAGGGCTACGGGAAAGTTTTGCGAATACGACGTGATACAGACCTCGGTTTAACCGGACTCTCAGCCACCGAGTTACAGGCCGCCCCACCAGAGCGGCTAGGCAGGTGGCCTGAGGTATTTGTCATACCCACTTTCTCGATGGAAGTTGAGTTTGCTCTGAGAGAGCGCTATTGTGCATATCTGAGACATGAAACGGTGCTGAAAATAACAAGGGATAAAAAACACAACATTCTTGATAGGATGGCTTGGACAATCTTCAATTCCAAAGCGTACCCAAGTGACAGGCAGTTTGCCAAGGCAGCTGAGGCCCTTGTAACCAAGCACCCGTGTTTGAAAGAGCCTGGCTCAAAATCAGGCTGTGATGGCTGGAAGAACAGCCTGAAATTCAAAATGGGAAACTACAGGCAGAAGTTACGCCGTGTTGGGTTCCCAGAGGTTGCTGTGAACGGGGGGAGGAGGAGCAAGCATCGTCCTGACAATGAGCACGCTCGGAGCAACATTAAAGGAGCACGCCGGGCAGAGGTGAACTTCCTGCCCAACTTCCCTCAATGAGAAGATGAGGCCAGCCTGGAGAAACAGAGACTGGAGATGGTCCACGAGATGACGAAAGAAAACAGAGACCTGCCactcatcaatcaacacatgcAGAAGACATTTGCTCTCCGACGCCAAGAAATAGTTCAATCCAGTCCCACGGTAGAGCATCTCAGAACACGCTGGCCAGCACTCTTCCTCGAAGCCCAGGTACATGCTGAGTTTCAGAGAATCACCAACCAGAGCCTGCAGCAGACGTTCTACTCTGCCTTGGACCACCACACGCCCCGCCTGCTGACCCTgttcagggaggaggaggggaagtcCACCACCCATGGAGGGAAGTTCTCAAGCATCCTGAGAGTGTACAACGAGCAGTTCACTTCACAGGGAGAAAATAACATCACCGTGGCCCGTTCTGCAGTCCTGGCTGGTCTCCCTTTGTTGTTACGAAAggatagttctgatgtcttcaaaATCTGCGAGGTGGGAGAACTCAGCAACCCTGGTATTCTGGATGGAGTTTCCATTCTCTCAGTGGTGGGCCAGCACAATGAGGTGGTGGGTGGTATGCCCATCAGACCGGCCCATGTATCCATTGTCCTTGAGGATAAGATCGTCATGACTAACTCCCGCTCCTGGCCAGACGCTCTCGTGGTTGTTTTTGGGctactcttctccctccatctgaacTACCCCAAAGCCCTGGGCAGCACCTTTGAGTTCATGCAGAAAGTCTTCCTGAACCTCGACGATGGAAAACTGAAGCCCAAGCTGCTAGCGCTGAAAAATGAACTGTTGGCCTAATTCTGTAGTGATGAGATGGAATTTTACTTTGAGTGACCTCCTATATGCAGAGCGAGTGGTTTGAAAACAATGGTTATTTTTATTTACTTTACTTTTTATATTGTTGTACCTTTTTTGTGAAGGTAATGGATTTCATATTGTATTTCAATTCACTTATAACCCTTTAATGTGAAAAGAAGACACAGGTCAGTCAACACATTAACTTGCCACACACAGTCGATCTGCGACCCAGTTCTCTACCTTTGTTATACAGCTGCAGAAAACCCCCAAACGTTTTCTAGAAGGTTTCACCTTTGCAGACATTCCGACTGGCACATAATACATGTTCATAAGATGTTTATGAAAGTGTCTTTACCTGCTAttgtctctcttctctggcaGTGTTGTGTGATCCTGGCCTTCTATCTGAATTCTAAATGCTCACCAAGACACAGGACTATGTCTTAACTGTTGTAACACACTGAATATACGCTGAGTGTACATTATTgtgttgcacccccctttgcagcctcaatttgtcggggcatgggcTCTACAAGATGTCaaagcgtttcacagggatgctggcccatgttgactccaatgtgtcCCACAGTTGGCACGATGTCAATtaggtggtggactattcttgatacacacaggaaactgttgagcgggaaaaacccagcagtgttgcagtgcttgacacattcaaacttctttaacctgtctcctccccttcatctacgctgattgaagtggatttaacaagtgacaataaatagctttcacctggtcagtctgccatggaaagagcaggtgttactAATGATTTGTACACTCGCATCCTAtagtttaaaacatttttttttaattgcactgttggagccaaaaacacaagcattttgctgcacctttGATACCATATTCAAatctgtgtatgcgaccaataaacttcgatttgattttgatttgtagTAATGCAAACAGTGGAGAGCCAGGGCTGTGATGGCGGTCAGTAGGAGGGCACACCACATCACCAGAGATGCTGTAACTGGTCTCAATGTAGGAGAAGTAGAGCTCCATCTGCCACTGAGCCCTGGGAGGagaatacacacaatacactccATATAGCCTTCACAGAGCATACATACAGACTTAAAATAGCCTTCATAGACCATACATAAAGACTTCATATAGGATGTATGATGATGGAACACTATAGCCTTCACATAGCATAACGATGTAACACAGATAATACCCTTCATACAACCGTCAAAATCACATTGATCACAGTAAAGCAACTTTGGCATTATGTACATCAGTCCAGGGTTACAAGTAGAACATTTGAAAAGGTCCCAGAATGTTTGTTCTTAACACTCAATGGAGAGTGAGGCAGCAGGGGGGACACAGATTCTTGCCTTATTGCACAGCTCCATGTCAACTCGATGTGCACTGGTATCTGTGAGGCGGTTTCTCTGTCAAGACAGCTCACTGGTTTGTCTGTGTCGTTGGTCTGTCTGCCTGGCGCTGGTATATGTGTCTGTCGcgggtatgtgtgtctgtctgcctgtcgcTGGTCTGTGTGCCTGTCACTGGTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257218 lncRNA downstream 2377 12020965 ~ 12053769 (-) False G224956
TU257219 lncRNA downstream 2377 12042486 ~ 12053769 (-) True G224956
TU257222 lncRNA downstream 6609 12045392 ~ 12049537 (-) True G224959
TU257216 lncRNA downstream 38676 12017257 ~ 12017470 (-) True G224955
TU257244 lncRNA downstream 59699 11994218 ~ 11996447 (-) True G224978
TU257313 lncRNA upstream 68198 12136451 ~ 12139918 (-) True G225019
TU257330 lncRNA upstream 95470 12163723 ~ 12168508 (-) False G225032
TU257333 lncRNA upstream 95470 12163723 ~ 12169705 (-) True G225032
TU257350 lncRNA upstream 159305 12227558 ~ 12227877 (-) True G225048
TU257368 lncRNA upstream 198122 12266375 ~ 12308268 (-) True G225061
XM_021590602.2 mRNA downstream 78160 11966198 ~ 11977986 (-) True LOC110509608
XM_036969185.1 mRNA downstream 78341 11966198 ~ 11977805 (-) False LOC110509608
XM_036969174.1 mRNA downstream 105572 11895643 ~ 11950574 (-) True LOC110509399
XM_036969167.1 mRNA downstream 105573 11895643 ~ 11950573 (-) False LOC110509399
XM_036969162.1 mRNA downstream 105574 11895643 ~ 11950572 (-) False LOC110509399
XM_036969258.1 mRNA upstream 1951 12070204 ~ 12072287 (-) True LOC118945807
XM_021590799.2 mRNA upstream 8831 12077084 ~ 12081473 (-) False LOC110503589
XM_036969271.1 mRNA upstream 8831 12077084 ~ 12086940 (-) False LOC110503589
XM_036969266.1 mRNA upstream 16523 12084776 ~ 12086948 (-) True LOC110503589
XM_021590786.2 mRNA upstream 18921 12087174 ~ 12089471 (-) True LOC110509720
TU257215 other downstream 40045 12014926 ~ 12016101 (-) True G224954
TU257132 other downstream 246800 11808783 ~ 11809346 (-) True LOC110509592
TU257122 other downstream 259837 11795890 ~ 11796309 (-) True G224873
TU257113 other downstream 302466 11752851 ~ 11753680 (-) False G224869
TU257266 other upstream 3034 12071287 ~ 12081233 (-) True G224988
TU257419 other upstream 267988 12336241 ~ 12340966 (-) True G225099
TU257449 other upstream 386135 12454388 ~ 12457791 (-) True G225127
TU257501 other upstream 404046 12472299 ~ 12473060 (-) True G225171
TU258665 other upstream 998620 13066873 ~ 13067357 (-) True G226124

Expression Profile