RNA id: XM_021590439.2


Basic Information

Item Value
RNA id XM_021590439.2
length 1779
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110509520
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11776055 ~ 11779268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGAGATCAAAGAGGGACACAGATACTAAGCTAGTTTTGCAACAACAATCTGTTGATCAAAACTTCAGAAGGAAGGAGAAAAGAAGAGACCATGTGGCAGTTTCTCCTTCTCTTGggaacatccctgttagtgacagGGGGTCggtgtcagtgtctgtctgagtATACTGAGATGTTCGCAGAGGCAGGGTCCCAGGCAGTGTTACCCTGCACTTGTCGCTCTCCCTCCGCCTCTGCAGCCATCGTCCTCTGGAGCAAGGACCTTGAGGGgaCAGTATGGAGAAAGGGAAAGAGTGGACTGGAGCACTGGGGAATAGGAGCTGCCCAGCGTGTTCGATGCCCCCATTCAGAGGTTGGATCTGGTGACTACAGCCTGTACATAaaggaggtgagggaggaggaCAGCGGGAAGTACACCTGCATGGTGCAGGACGGCGAGAAAATCCTCTCTAAGAGGATCCTCCTCAgggtcatcaaagTATCCATCTCCCCACCTGCTCCAGTGGAGGGCAACAAAATGACAATCACTTGCAGTGTCTCTCCATGGCCACAGGAGGCGACAGTGAGCTGGATGCTCAACGAGAAGCGAGTTTACCCTGACAGTGCAGATTACGTCCTTTCAAAGAACCAGGCGAGTGTTTTGGAGAGCAAGGCATCTGCAGGCATGATGGGTAACTGGAGCTGTGTAGTGCATAAAGGGAGGAAACAAGGGAAGGCCACCACGGCCCTGACAGTGAGAGGTATCGTTAACCCCTCCAGTGCCAGTGCCAAGATGTATGCTGAAGTGGGGTCTGCTGTCACCCTCCCCTGTATGTTCTCCACTGGACTCACCCCATCAGACACAGCCTGGGAGAGACTGGACATCTCTGGCTCtgctctcccactccctccctccttcaacCTGACCTCCctgctatccctccctccctgggaCAGGTCTGTGGGTGTGGGGCAAGTGGGGCAGGGCGACGGGGGCAGGTACAGGTGCTCAGGGACAGTGGAGGGGCGCCGGGTGACCAAGGAGATGCAGTTGGTGACTGCCCAAGTGCTCAGCAACTCACCATCTACCCAGAAGGCCCCAGTCTCACTGACCTGTCACCTCAGCAACGCCAGCGAGGTCACTGAATACGAGTGGGTCCGAGTGACCTATGACCTCAATGGCACCCAATCAGAGAGCTCCGTCCAGACAGGGAGGGTCCTGGGGAtcaacagagtgacagacaggaacTCTGGCGAATGGGCTTGTCGATTCCACGGGAAAAAAGGAGTTCTAGGGAGCGTGACATACCACCTACATCTGATGAGTGGTCTGATGGGAGATAAAGAGACAGGTTCTTCCAGTAATGTTGCCATGGTAGCCGGCCTGGGTTTCTTCCTCTTGGTGCTGCTGTTGGTCTTGGTGCAGATGTACAGGAACTATCGGAGGCGCAAGCTGATCCTGCAGTACCCTGCCCTGGAGACCATTGTTCACACCATTGCtaatgagagagaggacagagagaggaacagagtgaaAGAAGATGAGATCTCCAAATAGAGGAGTCTCTGCAATATGACTTTCGAAATCATTTGACATGTCTACGATCAGTTGGGAGATTGTGGTATTTGTACATATTAATTCAGTGCAGACAATTGTAGCAGTTTCTTTCATATTTTCACCAAAACAAATGTGATTGATCTTTTATTTGAAATGTGACTGATTTTGTATATGTATGCCTTATTTTTCACTACCGGCACCTTAACCACCTATTAGACTTTTGTAATATAATGACTGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257110 lncRNA downstream 22375 11752851 ~ 11753680 (-) False G224869
TU257108 lncRNA downstream 23265 11752418 ~ 11752790 (-) True G224868
TU257107 lncRNA downstream 25303 11750053 ~ 11750752 (-) True G224867
TU257073 lncRNA downstream 67807 11706135 ~ 11708248 (-) False G224836
TU257074 lncRNA downstream 67807 11706135 ~ 11708248 (-) False G224836
TU257123 lncRNA upstream 2142 11781410 ~ 11781727 (-) True G224874
TU257117 lncRNA upstream 26869 11806137 ~ 11808096 (-) True G224870
TU257153 lncRNA upstream 37792 11817060 ~ 11819210 (-) True G224899
TU257173 lncRNA upstream 84542 11863810 ~ 11865070 (-) True G224918
TU257174 lncRNA upstream 86094 11865362 ~ 11865765 (-) True G224919
XM_036969079.1 mRNA downstream 37999 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA downstream 37999 11727284 ~ 11738056 (-) False LOC110509576
XM_036969073.1 mRNA downstream 38020 11727284 ~ 11738035 (-) False LOC110509576
XM_021590547.2 mRNA downstream 38205 11727284 ~ 11737850 (-) False LOC110509576
XM_021590257.2 mRNA downstream 161217 11613213 ~ 11614838 (-) True LOC110509335
XM_036969135.1 mRNA upstream 28845 11808113 ~ 11811663 (-) False LOC110509592
NM_001124380.1 mRNA upstream 40345 11819613 ~ 11825101 (-) True c1r
XM_036969159.1 mRNA upstream 79450 11858718 ~ 11862407 (-) False LOC110509614
XM_036969155.1 mRNA upstream 79469 11858737 ~ 11862403 (-) True LOC110509614
XM_021590419.2 mRNA upstream 83721 11862989 ~ 11889084 (-) False LOC110509511
TU257113 other downstream 22375 11752851 ~ 11753680 (-) False G224869
TU257114 other downstream 22375 11752851 ~ 11753680 (-) False G224869
TU257115 other downstream 22375 11752851 ~ 11753680 (-) True G224869
TU257101 other downstream 34471 11727362 ~ 11741584 (-) True LOC110509576
TU256045 other downstream 497427 11275917 ~ 11278628 (-) False G223969
TU257122 other upstream 16622 11795890 ~ 11796309 (-) True G224873
TU257132 other upstream 29515 11808783 ~ 11809346 (-) True LOC110509592
TU257215 other upstream 235658 12014926 ~ 12016101 (-) True G224954
TU257266 other upstream 292019 12071287 ~ 12081233 (-) True G224988
TU257419 other upstream 556973 12336241 ~ 12340966 (-) True G225099

Expression Profile