RNA id: XM_021590547.2


Basic Information

Item Value
RNA id XM_021590547.2
length 1480
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110509576
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11727284 ~ 11741584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTAGGATAAATACTTATGTAACTCGATTGAGCAATAGCAGACTGTGCGCCTATGGGTCACAAGAGACATTTCTCAAGTGTATACAAAAACAACAATTGAAACACCTGCACGGTGCCTGGGGGGTTGTTTCTAAATCCGGATGTAGCATAATGCTAAAAATGCCTATTGCCTATTGGAGCAACAGATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctctcttgtccaATCCCTCACGTGCGACAATAAAACACAGTATGCTTGGCCACTGCATGACAGCCAATGGTGCTGCAACAAGTGTCCACCAGGTCAGCATCTGGTGGGACGCTGCACCGGTCAGAACAGCCCTACCCAGTGTGCTGACTGCGCCAGCGGCTACTACTCAGACAGCTACAACTTCAACATAGGCTGCAAATCCTGCGATGGCTGCAGCAtgagtgAGCTGCAGTATGTATCTAACTGTTCCACCAAGCAGAATGATGTGTGCAGCTGTAAACCAGGCTACCGCTGCAGAGGAAGTGGCACCTGTCTGGACTGTGAGGAGATCCCCAGCCCGAACACACCCAAACTCATACCGACACCTCCCATCATGCCAGCTACAGTGTCAAACCACTCGGTGCCTGGTATCCCTAATCATAGACCTAAACCTGTCACCAAACCTGGTACTGGGCCCAGAACAAATCCAAACCAAGatgatAGCAAGTGGCTcccggtgtgtgtgtctgcagtgtgtgtgtgtctactgctCACCTGCCTTGTTGCCATCTCAAAGCTCAAACCTTTTCTGCGATGGATTGGTTCACCAAACAGCTTCTGGTCTCCTAAAAAGACTACTCCAGCGAATCAGAGCACAGCGGAAGAGGAAGTGCCCATGCCGGTCCAGGAAGTGTGTGGAAAGCCAGAGCTGCTACTGGACGTATGATGGAGGAAGTGGGTGTCGAAGGAGAGGATGAGAACTCCCAAGCGAGCTGGGAGACCCGGGAGACAAACAGACTACCTCACATTCCCATTGAAGTGAAACTAACCTGAAGGCTAGACAGGCTGCTGTATTGGTTTAACGCAGTGGCTTCTGTATCTAGGACTTTCAGAAAGGACAAGAAAATAGGACAAAAAGACACTTTGAAGTATGAAGATACAGGCtaaagatgagagagggagtgggagtctGTGACCGAGAAAGAGCAGAATGAGAGTGAGAAACGAAGAGTGaacaagagacacagagagacagacacacacgcacacacacacacacacgcacatttgtGTGCTgaatacatgtactgtacatgtttataTTGAAGATGTTTTACACCTTCATTATGATTTTAGCTGTATCTATGCTTTATGCCAGTGTTTACTCTTACATAGTAGTGGCTGTTTAAAACATACAGTGCTGTATTTTAAATAAAGAACAGAATCACAAATGTTACAGGCCTACTGTAATGTCAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257073 lncRNA downstream 19036 11706135 ~ 11708248 (-) False G224836
TU257074 lncRNA downstream 19036 11706135 ~ 11708248 (-) False G224836
TU257075 lncRNA downstream 19036 11706135 ~ 11708248 (-) True G224836
TU257077 lncRNA downstream 23144 11702921 ~ 11704140 (-) True G224838
TU257091 lncRNA downstream 24579 11701895 ~ 11702705 (-) True G224852
TU257107 lncRNA upstream 12203 11750053 ~ 11750752 (-) True G224867
TU257108 lncRNA upstream 14568 11752418 ~ 11752790 (-) True G224868
TU257110 lncRNA upstream 15001 11752851 ~ 11753680 (-) False G224869
TU257123 lncRNA upstream 43560 11781410 ~ 11781727 (-) True G224874
TU257117 lncRNA upstream 68287 11806137 ~ 11808096 (-) True G224870
XM_021590257.2 mRNA downstream 112446 11613213 ~ 11614838 (-) True LOC110509335
XM_021590216.2 mRNA downstream 178543 11503867 ~ 11548741 (-) False fam131bb
XM_021590220.2 mRNA downstream 178543 11503867 ~ 11548741 (-) False fam131bb
XM_021590221.2 mRNA downstream 178543 11503867 ~ 11548741 (-) False fam131bb
XM_036968939.1 mRNA downstream 178543 11503867 ~ 11548741 (-) True fam131bb
XM_021590439.2 mRNA upstream 38205 11776055 ~ 11779268 (-) True LOC110509520
XM_036969135.1 mRNA upstream 70263 11808113 ~ 11811663 (-) False LOC110509592
NM_001124380.1 mRNA upstream 81763 11819613 ~ 11825101 (-) True c1r
XM_036969159.1 mRNA upstream 120868 11858718 ~ 11862407 (-) False LOC110509614
XM_036969155.1 mRNA upstream 120887 11858737 ~ 11862403 (-) True LOC110509614
TU256045 other downstream 448656 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 552917 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 653534 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1704081 10020648 ~ 10023203 (-) False LOC110508724
TU257113 other upstream 15001 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 15001 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 15001 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 58040 11795890 ~ 11796309 (-) True G224873
TU257132 other upstream 70933 11808783 ~ 11809346 (-) True LOC110509592

Expression Profile