RNA id: XM_021590221.2


Basic Information

Item Value
RNA id XM_021590221.2
length 5375
RNA type mRNA
GC content 0.45
exon number 8
gene id fam131bb
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11503867 ~ 11548741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagacagtgtgcaagagagcgagtgagagcgaagcgagcaagagagagaagcgtgagatagagagagagaatgtatggTGTCAGGGTAACGCTTCCTTGCTTGTATCCAGGGCCTTTGTGAATACACCATGGGATGCATCGGCTCACGGAGACTCAcggcAGATGGAGTGCCAGTAAAGGATGGGGAACAGCTGTCTATGGAAGACACCACGTCCATCCTGCCTCGTCTGAAGAGGAACAACTCCAATAACTACGGGATCGGTGCTCTGGCTAAGTCCTCACTGACaggTGTGAATCGCTCCATGAAGGACAAGGTGACCAAGCCTACATCCATGGCCCAAGGCCGGATGGCACACATGATCGAGTGGCAGAACTGGGACATGTCTGTGGTGGGCCCGGGGGGTGTCTCCGTCCCACGCAAGTCCACGGCAGAgcaggagatggagagacggtTAGAGAGCGACGCCTACAGCGACCTCAGCGACGGGGAGAAAGAGGCTCGCTTCGCCGCAGGTATCCTGCAGCAGTTTGCCATCTCCCAGGCAACGCTCATGGCCTGGACCtccatggatggagagagcatgaGGTCAGGGTCTAACCAGGGCAGTGTGGCCCACCTCAGCGAGGTTAACCAGGAAAGCATCACCAGCCGAGACCAGATATTGCACCACTCCTCTGCGGACATGTGGCCCAACACCTATGTCGCCCAGGGCCTCtactgcctctcctcctctgacgCCTGGGAGCCAATCAGCAACGAGCCCTCCGGAGTGGCCTCTCCCGCTGCTGGCTCCTACGTGATGCAGCAGGGCGGGACTTCCTGTGATGGGTATGATGGGAACGcgttgcagcagcagcagcagcagcagttcaACCTACAGCAGCAGAGTCAGCTCCAGCAGCTGCAGCAGCTACAACAGATACAGCACTACCAGCAACAGCAGCTCCTGTATCAGCAACAACAGTCTCTGGAGCAAAGGCTGCACAGCGCCAACCACTCGTTGCAAGCCACGCCCAACAGCACCATCCACAGCCTGGCCCCTGCTACCCACGCCCCATTGGTGGACCTGTGGGGGGCGGGTCAGACAGAGTCCTATCAAGCGGATATTGGAGGGTACAACATAGGCGTGGCAGCGGTGGTGGAGGCGGCTTTGAATGTTCCGTCTGGGGATGAGGGGGCGGGGACAGACCATTCCCATCTGctggagcagcaggaggaggaagatgaactGAAGGACGAGGAGGTGACACTCTGCATGGAGCCGGAGTCTGCCACTCTAACACAGAGAGATGAAGCCATCACCTCCGGGGGCAGTAGTCCTGGGCAACGTAGTCCGGGGCGCAGTAGTCCGGGGCAACCACCAGCACAGCAAATCACAGAGCGGAAGGCCTCTGATGTCAGCTGTGGAGCCATCCAGATgctggaggagaaggaagagaagcaGGGGTCCACTGTTGCTGCCATGGCAACCAACTGATTGACAGATTGTCCTGAGAAACGTGACAGACTGACCCTTGGCGTCAGGAATGACTGAGCCTTATAATTAAATATTTATCAATAAATATGTTCCTTTTTCAGGTATCAAACACATTTTTGATGGGATATAAACTCTTGTGACCACTGAAGAGCAGAGGAGGAAGATTGGAAACAGACTCACGCAGTGACAACAGCTGGTCCAACGGACAACTTTTTTTTGGAAGCCTCACATTCCCagacagaaggaggagggagggatgaatagagggagggggaaaaaGACTGAGCGAGAAAAAGGAGGTATGAGGGGACGATAAAAAGAAGAGGAGCAGCTGAGCTTGAGACATTTGCATCAGGAAgaggaaacggaggaggagggaatTGAAACGCGCATGCTTTTTAAACAAACGACTTTATCCAGTCCAGCGTCAAATATGATAATGATCATTAAATCTATAGTAATAAAACATTATCATGACAACAATGATTTTCTAACAAAGAAAACAATCATGACAACACAAAAATCTATGTATAAGTGAATGATAAAAGAATATATATCAAAATCACTGTTTTTACAACACTATCTCTCAATGGGAGAACTACTCTGTTTACAGCTTACACTCAACACATCAAATAGAATAATGTCAACCCCCTAACTTGAAGAACAGAAACACTCACAAGTTATACCCTCTCCTCTTATGTCATTCACATCTAGCATCCACAACACTTATAGAACTAACTGCACGAATACAGAGCAACTTTAGTAGGTTGAGTTCATCATAACCCCCTAAAAATTACACCTATTCAATTATCCCCAAAAATGATTTAAATCCAAATTGGCTCTCTGCAACCTAACCACTGCAGTGAAATCTACTTGAACCCTCCTAACACAGTTAGAAAGACAACAACGTTACCATGTTGCTGTGTTCTCCAGATGTCCAAGGCACATAAAGGCTGCAGGCCTGTcggccacacacacagcactgcacAGTTAAAGGAATGTACTGTACAGTAAGATAGTGTGCTTCCTACTCTGTCTTTCCGTATGTTTCTTCAGAATACTATGGAGTACCTGTCCTATATTGAACTGTATAGACTTTGCACTGAACCAGAGAAGACTCAGGGCATGGAGCTCCTTGTAGTCTGCTTGACTGTGCATCATGACTGACAGGTCCGTGTCATGGAGTGAATGGTGAAGAGACAGCGCTGTAGTAGTGAATCCCTTTGTACTGATGCCATCCAACAGATCAGAGGCAGCCTTTGGACTCTGTCACACGTCAATGTCCTTGATTACTGTTCAGAAAGAGCCCTTAGCATCACCAAGAACCAAAACAGAACCACTAGACAAGATGGATTCTGAGCTGTTGTTCCAGGTTCCAAACTAGAGATGGCTGGAGGAAGAGGGAATGCTctggaatgttttggtaccaacAGAAAGAGGATTTAGATTGAGATGTGCTTCTGTTTTAACCCAGATTGTTGTTTTGATGTCAGCTCTTGGGGACAATACCAAGCTTTTCTTTGTGGAGAAAAGATGAGGAGAAAATGTTTCTCTGAATGGTGTAGGTTAGAGCTGTTTGAATTGGGTGCTGATTCTTAGAAGGGAAAAAACACATCTTCAAAATTGTAACTAATTAGTGAGGAGCCAAACCCAGGTCTCCTAAACGGCTTGTGGCCACTACTGTCAGATAGATGTAAATACTAATGAGAGAGGATATAAACCATCTCTCACAGTCCCCACTGCAAcagtttctttattttctacacgTCTCAGTCCCAGCTCTTTCCTTTGGGAATCTTCCTGAGCTCCCAAATGAAGCGTATTGCGTTTAGATTGGTTTCTATCACCACACAAGTAAAAGGAAAAGGATAGTGGAATGTCAACATTGTAAATAGTGTGAACGttaaaatattggatatcggaaTACTGTTATAAAATAATGCAAAGGACCTACTTTGACTGGGTTTAAGGAGAACATTGAAGTCATTCAGGGAATAGAGCTGAATACTAGAACCAAACACTAGAACCGAACAGAACCGGTATCTTCCTGTTCATGGTGACTACAGCGATGGAGCAGAACTCTGCCTGAGTCGAGTGTGACGTTTGAGTTAGCGTGTGTATTTCCTGAAGAGGAAAGTGTGTATCCCAACGGAGGAATGGTAGTGAAGTTCAGAGACATGATAGAATAGTGGAATTTTGGAGATACTGGTCTGGAGTATCTGTGCACGTGTCACTAATAAAAACCACAACAATAGcagttattattattagtagtattctTATTCATATCATtatgaatattattattattattaatattattattatgtgacGGAGAACAACTTTCTCCTTTCACTCTGATGATTGTGTGAAAAAAACTTTTAAGATAGAAAAAAGGTTTATTGACTTGAATTCATGAACTTATTGATTGATTATTTATGCAATGTTGGGACAATGTTTATTTTTCTACTGAATGATTGACATACCCCTCCAGTATAAGACAGAATATGTGTGGTTGATGTAGAGCAGTTTCCTGTTGGTTGGGGCTCTCTCTGATCCGACAAACAGACAGTGATTATAATACCCTAGGCCAGTGGTGGAAACTTCTGGAGGGCTTCATTGTGGCCACAATTCATTGTAATCAGTTGTGTTAAAGCTGGGCCGGAACAAAACCCTGCACACACTGACTGCATCCCTCCAGGacaagggttaaggttaaggttaccCACCTCTTCCCTGGAGCTGTCCATCATGAAACACACAATGATGTCATTTAtatagtcataaccagtcatGAAGATTCATGTCACAGCTGCCATGATCACCCAGGCAATGACAACGCAACCTCAACCACACAACTTCCTTTAGGCTACTAGTCATAAGTGTCCATCAGCTGCCATGACACGTGTGACGTGTCTGCAAGACAGGATGCACATTGGTGTTAGAACTAACCAAGGCTAGGAGTCTATCCTGACCACGTGACCTGACCAGGATAGACTCAGCGCCCCTACTTCTAACAGATGGTTCTGGTGAGCTGCAACCTTGTGGTGTTCTTCAGTTTGTGTTATGCATTAGTCTTCACCTGTCTGTCTCAGACTGGCTCTGAGAGCTACAACCTACAGGATGTCTTTACCCAACCACtcttattcatttatttatttcatgatTATTTGGGGGGAGGAATAACATGACAGCCTGTACATAGTTTATTATTTATTGTAGGTAAGTCTTTTTGAAGCAgtattgttctgtgtgttgtccttgggACTTTCTGTAGTGATAGACCTTTGACCCCAGAGAGATTGTTCTGCTTCTTTGAAAGCACCAACATGGACCCAGAGAATGATACTACTTCAACAAAGATATTTTATTGATTTTTGGATAATTAAGAACTTAATAATTGAATAAACTAATAACAAGAAGCCAAATGTATTTCCTTGATGTTCCTGTTTATTGATTGTCtttgttgattgattgactgattgatttccAGTTGATTTCTTATTATGTATGATTCTACTGCCATCTTTCAATACGTAACTTGTCTGCAGGCAGTCTTCTTGCCTTTCTAccccttgctttctctctttgTACCGGTTCTGTAtatttgtgtctctgtctgtccgaGTCTGTCTGTCCATGTAGTTGTCTGTTTTATAGTTGGAAGAATCACTGCCAGAAAACATTGCTTAAAAAAATCTGACAGATTGACCAAAGGTGGATTTGAGGCAAACAgacattttaaaaaaattatgTAGTCAGTTGGAACTGTGTGGCACAGAACCCTGAGGTAAATACACTTGTATACAATTGGGTTGATTGAATGTTTTAATTtgagatgatcaatgtaaacTGGCAAGACCAGTATATTAAAGCCCATACCTATGCATGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256978 lncRNA downstream 472 11502973 ~ 11503395 (-) True G224752
TU256953 lncRNA downstream 37808 11465710 ~ 11466059 (-) True G224732
TU256946 lncRNA downstream 40074 11462852 ~ 11463793 (-) False G224731
TU256951 lncRNA downstream 40482 11463104 ~ 11463385 (-) True G224731
TU256939 lncRNA downstream 46833 11456708 ~ 11457034 (-) True G224724
TU256996 lncRNA upstream 1079 11549820 ~ 11551259 (-) True G224770
TU257002 lncRNA upstream 13307 11562048 ~ 11562336 (-) True G224776
TU257005 lncRNA upstream 16546 11565287 ~ 11566514 (-) True G224779
TU257010 lncRNA upstream 20794 11569535 ~ 11569760 (-) True G224783
TU257015 lncRNA upstream 26422 11575163 ~ 11575525 (-) True G224788
XM_021590198.2 mRNA downstream 49501 11449258 ~ 11454366 (-) True LOC110509245
XM_021590197.2 mRNA downstream 49504 11449258 ~ 11454363 (-) False LOC110509245
XM_021590199.2 mRNA downstream 49504 11449258 ~ 11454363 (-) False LOC110509245
XM_021590187.2 mRNA downstream 67239 11433118 ~ 11436628 (-) True LOC110509171
XM_021590181.2 mRNA downstream 67240 11433118 ~ 11436627 (-) False LOC110509171
XM_021590257.2 mRNA upstream 64472 11613213 ~ 11614838 (-) True LOC110509335
XM_021590547.2 mRNA upstream 178543 11727284 ~ 11737850 (-) False LOC110509576
XM_036969073.1 mRNA upstream 178543 11727284 ~ 11738035 (-) False LOC110509576
XM_036969079.1 mRNA upstream 178543 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA upstream 178543 11727284 ~ 11738056 (-) False LOC110509576
TU256045 other downstream 225239 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 329500 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 430117 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1480664 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 178621 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 204110 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 204110 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 204110 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 247149 11795890 ~ 11796309 (-) True G224873

Expression Profile