RNA id: TU255996


Basic Information

Item Value
RNA id TU255996
length 689
RNA type TUCP
GC content 0.46
exon number 3
gene id G223942
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11172120 ~ 11174367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggtTCAAAACAGGTGCGCATTTTTATTAAGTGTTTGTTTCATTAGTAACACTGTTAATAACATTTAGAATGGTGTGGTACGTGGTCAACACATGTCCTTAGGCACGCTACAGGGGTCAAAGTTGAAGGTGTGGCTAACAGAAAGTCCTGAGGTCAGCCATTTTAGATCTTGCCGGGAAAGCTTCCGGCCTCTATCTGGTCGTCCCACTTGGCAACCCAGCTCATGGGACAGATACTCTTGTAGACCCTCTGGTACCAGTCACAGGGAGCCACATCCTGGCCTTTGTCTGACAAAGCTTTGTTGCACCTGTGGAAGtCCAGATAGTTCTGAAAGCAGTTGCGGGTCTGGTTGGTGTTGGGGAAGCGGGCGTCGAAGGGAGCCGTCCTGTAGTTCTTTATCTTCTCCTCAATAACGTCAGACATGCTGGCTAGCTGGCGGTCTCACTATGTCAACACTGAAACACATCGATAGGGAGATGTCATATAATGTCACGAAACTAAACATGAGTTGTACACTAGTCTCACGAGGCCATCCTTCCAAATCTGCCCTTGTTGACTGGCCTGGGCTTCCGAAGCTACCTATACACTTGCACACAGTAGGAAATGATCTTGTTGTCATGATAGAGGATGatagtagaggatgcctggatattttttaaaaatgccttcctaaccatcttaaataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255976 lncRNA downstream 63880 11104090 ~ 11108240 (-) True G223924
TU255964 lncRNA downstream 82562 11089346 ~ 11089558 (-) True G223919
TU255957 lncRNA downstream 92587 11078727 ~ 11079533 (-) True znf628
TU255948 lncRNA downstream 106515 11061915 ~ 11065605 (-) True LOC110520907
TU255935 lncRNA downstream 132383 11038462 ~ 11039737 (-) False G223898
TU256005 lncRNA upstream 4088 11178455 ~ 11179883 (-) True G223950
TU256004 lncRNA upstream 42198 11216565 ~ 11224830 (-) True G223949
TU256047 lncRNA upstream 101550 11275917 ~ 11278628 (-) False G223969
TU256048 lncRNA upstream 101550 11275917 ~ 11278628 (-) True G223969
TU256879 lncRNA upstream 172294 11346661 ~ 11353026 (-) True G224676
XM_036968754.1 mRNA downstream 7150 11151396 ~ 11164970 (-) True rasip1
XM_021589998.2 mRNA downstream 84991 11079975 ~ 11087129 (-) True LOC110509048
XM_036968745.1 mRNA downstream 86646 11079975 ~ 11085474 (-) False LOC110509048
XM_021590011.2 mRNA downstream 92550 11068525 ~ 11079570 (-) False znf628
LOC110520907 mRNA downstream 105147 11065489 ~ 11066973 (-) False LOC110520907
XM_021590085.2 mRNA upstream 184646 11359013 ~ 11363845 (-) True LOC110509113
XM_021590107.2 mRNA upstream 191056 11365423 ~ 11368231 (-) True LOC110509134
XM_036968814.1 mRNA upstream 196265 11370632 ~ 11386718 (-) True LOC110510606
XM_021590140.2 mRNA upstream 250426 11424793 ~ 11432989 (-) True styk1b
XM_021590196.2 mRNA upstream 258751 11433118 ~ 11436182 (-) False LOC110509171
TU255954 other downstream 98370 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1148917 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 1148935 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 1157228 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 1169226 10001415 ~ 10002894 (-) False LOC110508696
TU256045 other upstream 101550 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 552995 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 578484 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 578484 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 578484 11752851 ~ 11753680 (-) True G224869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00009796 True 284 mRNA 0.57 2 PESF01000053.1 3764 ~ 4810 (-)