rasip1 (LOC106605844)


Basic Information

Item Value
gene id rasip1
gene name LOC106605844
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11151396 ~ 11164970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968754.1
ggatatAGGTGTTGTCCAGCATGAAGGAAGGAAATTCTGTCACTTAGAACAATGGGCCTGTTTCTCTATCTATAGACCcacagaggcagagaaagagagagaaggagcccTTACCACCATTACCTagaagacagacagaaaacacaaagaaaaagagagagagtggagaaaaATATGTTCTGATTTAAAAAGAGACTATATTGATGAAGAGAACGTgttcgagagaaagagagatacctGTGGCACAGATAGACATTTTGAAAATGGAGTTTTTGTCTTGGGGAAAAAGGAAAATACTAAGTTGTTTTTAAccattttgtttttttctgttgAGAAGGACTAATAAAATACTTATACGAAGAGGGAACTGCAGTCTTTCTCGATGGATCAGATGGAGGGGACTGACAGTCCTCGCTTCAGGAAGCTCCATTTCCCTGTGGGTCTGTGGATCAACTCTCCCAGGAAACACTTTGCCAAGCTGGGGGCCCGCTGGCCCAGCGCTGTCTCTGTCAAGTCCACCACCAGCTCTGACGCAGCGTCCCTCCACGAGGCCCCatcttccctctccatctccaccccctccctcgctcccccatccccctctccctctccggcctTCCTCCGGCCCCGTCCCGCCGGGCCCCAGTCCCGCACCAAGCGTCTTTCCCACCTCTTCCTGAGGGGGCGCTCCAACAGTGACCGAGACAAGGCcataggggagaaggagagggaggtgtgggCCCACTGTGCTGCCCCTTCCTCCCACCACTACCTGCCCCCTGCCTCCTCCACAGCCCCAGGCCTCATCAAGATCTATGGGGATGCTCTGTCTAGTGGGGCTAACTACCGCTCTTTGCTGGCCACCGCCCACTCTACAGCCAAACAGCTCATCGCCCAGGTCATCACCCgctatacggagagagagagggaggagactgaCGATGCAGCCCTGCAGAAACACAGCCCGGAAGACTTCCTGTTGTGTGATGTCATTGGAAAGCCCATCCAGCAACCGGATGGAGCCTTCCAATGGGAGACAGAGTGTCGTAGGGGCGTGGCTGAATGGGAGTGCCCACTGCTATTGGTGGACATGTGGCGGCCCAAGGAGGGGTTTGAACGCCGCTTCGAGATCCAGAGACGGGACGACTacgaaagagaggagagggagaaagagaaggagcgagagagggaaggggagaaccACACAGGTGTACGTTGGAGGCGGAGCCGCATACAGTCGGGGGGCGGGGCTGAGGAGGGCGAGCGTGGTCATCGAGGACGGAACTCGGAACTCAGGAGGAGCATCAGCGACATGAACCTCAGCCTGAGGCGTCGCCAAGGAAACCACATCGGCAATGACCCCCGTCGCTCCGGAAACCACCCTAACAACAGTGCAGGTCTTCAGGACAGGAAGAACATTGTGAGCATGATAGCTCCATTGGAGCACGGAGAGATgatgaggtcaaaggtcagagaCGAGGTGGAGCGGAGAAACAAAGCAGACAaagcagtggaggaggagaaagactACTCAGCCTGCGACCTGGAAGTGATGTCACAGAGCCTGATCCTCCCGCCCACGGACCGACCCtacttcctgttgctgcagggcTACGACCAGAGCAAGGACTTTGTTTTGTACATCATGGCAGGGCACACACACGTTTTTGGGCGGAAGCCaacaatgagggagagagagaaggacagagaaagggagaggaaggggaagaggcTTCTGAAGGTGGAAACGTTCCTCTCTGCTCCAGACATGCTGGCCAGGCACCTGTTGGTCAGGAGAGACTCAGCCGTACCCGACGCTCCCCCTGGGCAAGctcTGATGCGTCCCTTCAGAGGAGGAGTTGTCACACACAACGGAGAAGCTCTCTACCGGGAGGCGGTGCTTAAACCTGGGGACGTGATTGGCATAGGAGGTCATTTTCTCTTCCTGTATCGTGACCCCCGCGTGACCCCGGCCCCTCCGCTGGCATTGGCGCTGCCTTGGCAAGCGGATGTTCCCTCCACCTGCTGCCTCTCGGGATTGGTGGACAGACAGGAAGCGTTGAGGCAGTACCTGGGTTCCACTGAGGCTCTGCTGCGGTTCCAGCCCCGCCACGCTGACGCTCTGCTACAGGAGATAATCTCTAAGAACTCCTCTCCAGACTCAGAGGGCGGGCCTTTAGCCCCAGCCTTTCTCCTGTCAATCATGATTGACCATGCCTCCAAACACCTGGATCCCGCCCTCACGCCTCAGTTGCTGCTGAAAGCAGCCAATCAGATCAAAGGGATCGTTTGGGATAACATTAAGGAATTCGGGGATAAGCATCCCACGCAAAATTCCACAGAGCAGGAGGTTGAACTGAGTGCGCCCAGTGCTCAGAAGCTGTCCTCTGACCTTCGACCTCTGATGTTCTGGATGTCCAATGCCACAGAGCTCCTCAACTTCTTCCAGGTCAAAGCTGAGGCcatggagagagactgggagttTGAGGCTCCTGGTGACCCGGTGTTGTCAGCTGACCTGGACACCTGCTCCGAGGCCCTGGCGCAGCTTGATGACGTGATAATGCACACCTTCCAGCAGTGCGTGTACCACCTCACAAAGACGCTGTACTCCCTCTTGCCAGCTCTCCTGGACAACAACCCTTTCTCCAGcctggagaaagagaaagagagagatgagggtagGGAGATGGATGGGCATGAGGGTGGTGGGGGGGCGGGAGAGGGGGAAGACgtgtcctccctcccccctacgGTGGCTGGGCTGGTGGAGGTGTACCGCTGCTCCCTGATGCTGTCCCGGGAGGCCTGCCTCTCCCCCCCACTCACCTCCCAAACCTTCGGCTACCTCTTCTTCTTCACCAACACCTCCCTGCTCAACACACTgctggagagagatggtctgttctcctggtctagagCGGTCCAGATCCGTACAAACCTGGACCTGGTTCTGGACTGGCTGCAGGGCGCAGGACTTGGAGATATCGCCTCTGAGTTCCTGAAGAAGCTGTCCGTCACAGTCAATTTCCTGTGCGTCCCTAAGACCCGCCTCATCCAGTCATCCTGGGCCAGCCTACAGGAGGACCATGCCTTGCTAAGCCCCACCCAGCTGCACCATCTGCTGACCCATTACAAGCTGGGACCGGCCAGAGCCCCACCGACCTCCTGGGCCCCTCCCCCTGGGACGGAGCTCAGTGGAGACATCTTCGAAAGTTTCCTGGACCACCCCCCTCTCATCCTGCCAAATGAGACACCTCAGCTAGACCTCTCCCAGCCAATCCCCAGCCCTGAGCTACAAAAGGAAGTGACACGCCTGCGCAACTTCCTGTGGGGACTCGACCAGGATGAGCTGCCAGCCAATCAGAGGACCAGGCTGTGAGCGCTGGAAAGTTAATCTCTGGGTAGAAGCTACCCTTAGGCACAGTTCTAGGATCAGTTCACCATCCGCCTTAACCatgaagggggaaagacacaaAACTGACCCTTGATCAGTATCTAGGGGCAATCTCATCCATCTCAGGCAACTTTGATATTAACACTATATTGAACCCCCTGTCGTAAGGCAGATGCAATGGATAGGAATGgcaactggtgtgaggaatggcaactggtgtgaggaatggcaactggtgtgaggaatggcaactggtgtgaggaatggcaactggtgtgaggaatgacaactggtgtgaggaatggcaactggtgtgag

Function

NR:

description
ras-interacting protein 1-like

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968754.1 True 3715 mRNA 0.56 16 11151396 11164970

Neighbor

gene id symbol gene type direction distance location
LOC110509048 il-11 coding downstream 64267 11079975 ~ 11087129 (-)
znf628 LOC106605829 coding downstream 71826 11068525 ~ 11079570 (-)
LOC110520907 nat14 coding downstream 84423 11061915 ~ 11066973 (-)
LOC110520834 LOC106575151 coding downstream 97226 11051867 ~ 11054170 (-)
LOC110509040 necp1 coding downstream 99654 11042967 ~ 11051742 (-)
LOC110509113 c209e coding upstream 194043 11359013 ~ 11363845 (-)
LOC110509134 LOC106576832 coding upstream 200453 11365423 ~ 11368231 (-)
LOC110510606 LOC106605835 coding upstream 205662 11370632 ~ 11386718 (-)
styk1b LOC106576787 coding upstream 259823 11424793 ~ 11432989 (-)
LOC110509171 LOC100196661 coding upstream 268148 11433118 ~ 11436628 (-)
G223924 NA non-coding downstream 43156 11104090 ~ 11108240 (-)
G223919 NA non-coding downstream 61838 11089346 ~ 11089558 (-)
G223898 NA non-coding downstream 111659 11038462 ~ 11039737 (-)
G223950 NA non-coding upstream 13485 11178455 ~ 11179883 (-)
G223949 LOC100846954 non-coding upstream 51595 11216565 ~ 11224830 (-)
G223969 LOC106605840 non-coding upstream 110947 11275917 ~ 11278628 (-)
G224676 NA non-coding upstream 181691 11346661 ~ 11353026 (-)
G224679 NA non-coding upstream 193202 11358172 ~ 11358416 (-)
LOC110508724 prpf31 other downstream 1128193 10019313 ~ 10024005 (-)
G223070 NA other downstream 1136504 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 1148502 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1468025 9679758 ~ 9689081 (-)
G223942 LOC106576860 other upstream 7150 11172120 ~ 11174367 (-)
LOC110509576 LOC106576947 other upstream 562392 11727284 ~ 11741584 (-)
G224869 NA other upstream 587881 11752851 ~ 11753680 (-)
G224873 NA other upstream 630920 11795890 ~ 11796309 (-)

Expression


Co-expression Network