LOC110509040 (necp1)


Basic Information

Item Value
gene id LOC110509040
gene name necp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11042967 ~ 11051742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589987.2
CGCTCTCGCACCCGTTAACGTGCACGATCACCACACACCGATTGAATTAAAGTCAAGATGGCGACCGAGGGCGAATACGAGTCGATCCTGTGTGTGAAACCTGACGTCAACGTTTACCGAATCCCGCCGCGGGCATCGAACCGGGGAGTCAGGGCTGCGGATTGGAAGCTGGACGCCCCTGATTGGACAGGCCGTATGAGAGTGACGGCTCGGGGAAAAGTGGCTTTCATCAAACTGGAGGACAAGATCTCTGGGGAGCTGTTTGCACAGGCACCAGTGGACGAGTACCCTGGCATCGCCATAGAAACCGTCAGTGACTCCAGTCGGTACTTTGTGCTTCGGATCCAGGATGAGAGTGGTCGCAGTGCGTTCATAGGCATCGGGTTTGGGGACAGAGGAGACTCGTTTGACTTCAACGTGGCGCTGCAGGACCACTTCAAgtgggTGAAACAGGAGCTTGAGATCAGTAAGCAGTCTCAGACTCCAGACAACACTCCTAAACTGGACCTGGGTTTCAAAGAAGGACAGACCATCACTCTCAATATCGGGcaaggcagaaagagagacaagtcCCGCCCCCAGAGCGCTGGTGGCTTTgggctcctccctcctccccctagcGGTGGAGGCACCAAGATAGCCCCTCCCCCTATGTCAAGCTCCTCCAATGACAACGAAGGTTTATTCTCAGGGGGAGACTTATTCACTGCGGGAAGTGACTCGTTTTCAGGGGGAAGTGACACATTTTCAGGAGGAAACAACACATACTCAGCAGGAAGTGACATGCTCTCAGAGGGAAATAACACAGGCTGTTTGTTAGACCTGGACAGCAGTAACTCCAACTCTGTGGTGCAGCCGAACCCCAACCCTGCAGGCGGCTCGGACATGTGGGGAGACTTCTCTGCCCCAGAAAAGTCAATGTCTTCTCTCACCAACGATGATGGTTCCACCAACTGGCAGCAGTTCTGAGGTCGTCGCACAATCTCTTTCACTTGACCTTcacctgacctttaacccctgacCAGAGGAGGACTCCAGCAGAACACTGTATATTATCACCTCAACCTCAgtgtactctttctctctcttccccctctctttatttatctctctctcttcacccctctcctggCTTCCTCTCCTTaccatcctctccctctacatctTTCCCTCTCAGCCCCAAAGttactctctccccccgtctcctctccttgcccttctctccccccgtctcctctccttgcccttctctccccccgtctcctctccttaccatcctctccctctacatctTTCCCTCTCAGCCCCAAAGTTacactctctccccccatctcctctccttgcccttctctccccccgtctcctctccttgcccttctctccccccgtctcctctccttaccatcctctccctctacatctTTCCCTCTCAGCCCCAAAGTTacactctctccccccatctcctctccttgcccttctctccctctgtctctctatctattgcAACAGAGTATTTATTTATTACTGAGGGAAAAGACTGAGGGCAAATCTCTTTAAATGAAAGATGGTACAGAAAGGAATGATGGTGACTCACACTAATATAGTcttgataaataaatacattagttAATTTATGTACATAATA

Function

NR:

description
adaptin ear-binding coat-associated protein 1-like

GO: NA

KEGG:

id description
K20069 NECAP1_2; adaptin ear-binding coat-associated protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589987.2 True 1645 mRNA 0.52 8 11042967 11051742

Neighbor

gene id symbol gene type direction distance location
epn1 LOC106605818 coding downstream 74452 10950133 ~ 10968515 (-)
LOC110537203 LOC106576885 coding downstream 101172 10937442 ~ 10941795 (-)
si:ch211-149k23.9 LOC106591404 coding downstream 106716 10927995 ~ 10936251 (-)
LOC110508973 LOC106576890 coding downstream 147055 10878709 ~ 10895912 (-)
LOC110508957 LOC106576897 coding downstream 166838 10865535 ~ 10876129 (-)
LOC110520834 LOC106575151 coding upstream 125 11051867 ~ 11054170 (-)
LOC110520907 nat14 coding upstream 13747 11061915 ~ 11066973 (-)
znf628 LOC106605829 coding upstream 16783 11068525 ~ 11079570 (-)
LOC110509048 il-11 coding upstream 28233 11079975 ~ 11087129 (-)
rasip1 LOC106605844 coding upstream 99654 11151396 ~ 11164970 (-)
G223898 NA non-coding downstream 3230 11038462 ~ 11039737 (-)
G223886 LOC106591073 non-coding downstream 47534 10994675 ~ 10995433 (-)
G223881 NA non-coding downstream 59777 10982907 ~ 10983190 (-)
G223734 NA non-coding downstream 68545 10974219 ~ 10974422 (-)
G223723 NA non-coding downstream 98154 10944519 ~ 10944813 (-)
G223919 NA non-coding upstream 37604 11089346 ~ 11089558 (-)
G223924 NA non-coding upstream 52348 11104090 ~ 11108240 (-)
G223950 NA non-coding upstream 126713 11178455 ~ 11179883 (-)
LOC110508724 prpf31 other downstream 1019764 10019313 ~ 10024005 (-)
G223070 NA other downstream 1028075 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 1040073 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1359596 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1369528 9665862 ~ 9673439 (-)
G223942 LOC106576860 other upstream 120378 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 224175 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 675620 11727284 ~ 11741584 (-)
G224869 NA other upstream 701109 11752851 ~ 11753680 (-)

Expression


Co-expression Network