G223886 (LOC106591073)


Basic Information

Item Value
gene id G223886
gene name LOC106591073
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10994675 ~ 10995433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU255919
tccaccgTTCCTGCCTCTCTTATTTTCCTggcctccttctctacctcctctgctttcctcttctcctctctctccgtctcaatCAACCAGGGCCCACCCAGGTAGCTGAGGATCTCATCAGGGCCTCCTCGAAGCCTAGGCTGTGGGTTAAGCAGCTCCCTGAAAAGAGACATCAACAGTGGGCTGAAGCCTTCAAACTGTGGGGCCACAGGGTTCGACTTCTGATTCATCTCCAGGCTCAGGATATTGTCCTTTTCCCTTTCACCTTCACACCAAATTACTTCCTGCTCCCCTCTCAGTCCCTtgttcctttcctccctctccgtctcgcggTCATACCACTCCTTGTACCTCCTGTAGGCGGGGTCGTTGTGCGTGGTCTCTTCCCAGGGAAAGCATCCCGTCAGCAGGCAGTAGACCAGCACGCCCAGGGCCCAGCTGTCTATAGTGGTCTCCACTGTGATCCaaatgttctcctcctcctctccattctcctctctctgctccctcactTTCTCAGACTCTTTGGCCTGCTCCACCTCAGGCGTGCAGAAGGGTGAGTCGTACCAGACGGCGCGGATAGTGCAGCCAGTGGGGCGGGCCAGGCCGAAGTCACCCAGTTTGACCCAGCGACAGGTGTGGTCACACAGGAAGATGTTCTCTGGTTTGATGTCCCGGTGGACGAAGCCAATGGAGTGGAGGTGTGAGACGGCACCACTCAGCTGAGACATCACACTCTGGACACACTCTTCATCTACA

Function

NR:

description
serine/threonine-protein kinase SBK2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255919 True 759 lncRNA 0.56 1 10994675 10995433

Neighbor

gene id symbol gene type direction distance location
epn1 LOC106605818 coding downstream 26160 10950133 ~ 10968515 (-)
LOC110537203 LOC106576885 coding downstream 52880 10937442 ~ 10941795 (-)
si:ch211-149k23.9 LOC106591404 coding downstream 58424 10927995 ~ 10936251 (-)
LOC110508973 LOC106576890 coding downstream 98763 10878709 ~ 10895912 (-)
LOC110508957 LOC106576897 coding downstream 118546 10865535 ~ 10876129 (-)
LOC110509040 necp1 coding upstream 47534 11042967 ~ 11051742 (-)
LOC110520834 LOC106575151 coding upstream 56434 11051867 ~ 11054170 (-)
LOC110520907 nat14 coding upstream 70056 11061915 ~ 11066973 (-)
znf628 LOC106605829 coding upstream 73092 11068525 ~ 11079570 (-)
LOC110509048 il-11 coding upstream 84542 11079975 ~ 11087129 (-)
G223881 NA non-coding downstream 11485 10982907 ~ 10983190 (-)
G223734 NA non-coding downstream 20253 10974219 ~ 10974422 (-)
G223723 NA non-coding downstream 49862 10944519 ~ 10944813 (-)
G223717 NA non-coding downstream 73685 10918689 ~ 10920990 (-)
G223711 NA non-coding downstream 82967 10911271 ~ 10911708 (-)
G223898 NA non-coding upstream 43029 11038462 ~ 11039737 (-)
G223919 NA non-coding upstream 93913 11089346 ~ 11089558 (-)
G223924 NA non-coding upstream 108657 11104090 ~ 11108240 (-)
LOC110508724 prpf31 other downstream 971472 10019313 ~ 10024005 (-)
G223070 NA other downstream 979783 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 991781 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1311304 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1321236 9665862 ~ 9673439 (-)
G223942 LOC106576860 other upstream 176687 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 280484 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 731929 11727284 ~ 11741584 (-)
G224869 NA other upstream 757418 11752851 ~ 11753680 (-)

Expression


Co-expression Network