LOC110520834 (LOC106575151)


Basic Information

Item Value
gene id LOC110520834
gene name LOC106575151
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11051867 ~ 11054170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520834
ATGATCAACACATTTGACAGTGTTCTGTTGGCCCAGAATAAGTTTATCTACCACTATAAGAACATGCGCTGGGCCAAGGGCCGACACGAAACCTACCTGTGCATCGTGGTCAAGAGGCGGGTGAGACCAAACTCCCTCTCCTTCGACTTTGGACACCTGCGCAACCGGTCCGGCTGTCTTgttgagCTGCTGTTCCTGTGCCTCATGGAAGCAGGCGCCCTGTGTCCCTGCCTGTGGGCTCCAGACAGTGTGGGACTGTGTTACTCAGTCACCTGGTTCTGTTCCTGGTCCCCCTGCTCAGACTGCTCCTACAGGCTGGCCCAGTTCCTCAGCCAGAACCCCAACCTCCGCCTCAGGATCTACGTCTCCAGGCTCTACTTCTGTGACCCGGAAGACAGCAGTGCGAGAGAGGGTCTCCGCATGCTGCAGAGAGCCGGGGTGCAGATCACTGTCATGAACTATGAAGACTATTTCTACTGTTGTCTACTGTTGGCAGACCTTTGTGGCTTGCAGACAGCGTGTGTTTAAGGCCTGGGACGGACTGCATCAGAACTCTGTTCAACTGGCCAGGAAACTTAACGACATCCTccagCCAACGATAAACAACTAA

Function

NR:

description
PREDICTED: single-stranded DNA cytosine deaminase-like

GO:

id name namespace
GO:0016444 somatic cell DNA recombination biological_process
GO:0009972 cytidine deamination biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K10989 AICDA, AID; activation-induced cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520834 True 610 mRNA 0.54 6 11051867 11054170

Neighbor

gene id symbol gene type direction distance location
LOC110509040 necp1 coding downstream 125 11042967 ~ 11051742 (-)
epn1 LOC106605818 coding downstream 83352 10950133 ~ 10968515 (-)
LOC110537203 LOC106576885 coding downstream 110072 10937442 ~ 10941795 (-)
si:ch211-149k23.9 LOC106591404 coding downstream 115616 10927995 ~ 10936251 (-)
LOC110508973 LOC106576890 coding downstream 155955 10878709 ~ 10895912 (-)
LOC110520907 nat14 coding upstream 11319 11061915 ~ 11066973 (-)
znf628 LOC106605829 coding upstream 14355 11068525 ~ 11079570 (-)
LOC110509048 il-11 coding upstream 25805 11079975 ~ 11087129 (-)
rasip1 LOC106605844 coding upstream 97226 11151396 ~ 11164970 (-)
LOC110509113 c209e coding upstream 304843 11359013 ~ 11363845 (-)
G223898 NA non-coding downstream 12130 11038462 ~ 11039737 (-)
G223886 LOC106591073 non-coding downstream 56434 10994675 ~ 10995433 (-)
G223881 NA non-coding downstream 68677 10982907 ~ 10983190 (-)
G223734 NA non-coding downstream 77445 10974219 ~ 10974422 (-)
G223723 NA non-coding downstream 107054 10944519 ~ 10944813 (-)
G223919 NA non-coding upstream 35176 11089346 ~ 11089558 (-)
G223924 NA non-coding upstream 49920 11104090 ~ 11108240 (-)
G223950 NA non-coding upstream 124285 11178455 ~ 11179883 (-)
LOC110508724 prpf31 other downstream 1028664 10019313 ~ 10024005 (-)
G223070 NA other downstream 1036975 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 1048973 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1368496 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1378428 9665862 ~ 9673439 (-)
G223942 LOC106576860 other upstream 117950 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 221747 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 673192 11727284 ~ 11741584 (-)
G224869 NA other upstream 698681 11752851 ~ 11753680 (-)

Expression


Co-expression Network