LOC110537203 (LOC106576885)


Basic Information

Item Value
gene id LOC110537203
gene name LOC106576885
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10937442 ~ 10941795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968666.1
GTCAGAATCTAGTGCACACACTCATGATAAGGACTGCTGAGGATGTCTGACAACGCAGAGTCTCCTACAGAAACGCAAAAAGATGAGCCTTCAACCCCACAACAGCCTACGGAAGACTCGGGGATGGCAGACGATAAGAAAAAAATTGATGTGTTGTTGAAGGCAGTAGGAGACACCCCCATCATGAAGACAAAGAAATGGTCGGTAGAGAAAGGGAGGACAGTGCAATCACTCTCTCAATTCATCTCTCGATTCCTCAAGATGGAGGCCAATGAACAGCTGttCATTTACGTCAACCAGTCATTCTCTCCCTCGCCTGATCAGGAAGTAGGAGTCCTGTTTGAATGTTTTGGCAGCGATGGGAAGCTTGTTCTACATTATTGTAAATCTCAAGCCTGGGGTTAACAGTTTTTAGCCCTTTTCAGTTcaaacgcatacacacacaatatTGTTTATACTCCTTCCTTGCCTAAACCAATGTTGTCATTGctaatttcttgtttgttttgctGTACATAACCAAATGTAAATAAatcatgactatatacagtaaaCCCA

Function

NR:

description
ubiquitin-like protein ATG12

GO: NA

KEGG:

id description
K08336 ATG12; ubiquitin-like protein ATG12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968666.1 True 558 mRNA 0.42 4 10937442 10941795

Neighbor

gene id symbol gene type direction distance location
si:ch211-149k23.9 LOC106591404 coding downstream 1191 10927995 ~ 10936251 (-)
LOC110508973 LOC106576890 coding downstream 41530 10878709 ~ 10895912 (-)
LOC110508957 LOC106576897 coding downstream 61313 10865535 ~ 10876129 (-)
LOC110508966 u2af2 coding downstream 72180 10853702 ~ 10865262 (-)
LOC110508947 LOC106576934 coding downstream 90200 10831566 ~ 10847242 (-)
epn1 LOC106605818 coding upstream 8338 10950133 ~ 10968515 (-)
LOC110509040 necp1 coding upstream 101172 11042967 ~ 11051742 (-)
LOC110520834 LOC106575151 coding upstream 110072 11051867 ~ 11054170 (-)
LOC110520907 nat14 coding upstream 123694 11061915 ~ 11066973 (-)
znf628 LOC106605829 coding upstream 126730 11068525 ~ 11079570 (-)
G223717 NA non-coding downstream 16452 10918689 ~ 10920990 (-)
G223711 NA non-coding downstream 25734 10911271 ~ 10911708 (-)
G223710 NA non-coding downstream 26946 10910236 ~ 10910496 (-)
G223707 NA non-coding downstream 34647 10902561 ~ 10902795 (-)
G223703 NA non-coding downstream 88089 10848946 ~ 10849353 (-)
G223723 NA non-coding upstream 2724 10944519 ~ 10944813 (-)
G223734 NA non-coding upstream 32424 10974219 ~ 10974422 (-)
G223881 NA non-coding upstream 41112 10982907 ~ 10983190 (-)
G223886 LOC106591073 non-coding upstream 52880 10994675 ~ 10995433 (-)
G223898 NA non-coding upstream 96667 11038462 ~ 11039737 (-)
LOC110508724 prpf31 other downstream 914239 10019313 ~ 10024005 (-)
G223070 NA other downstream 922550 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 934548 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1254071 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1264003 9665862 ~ 9673439 (-)
G223942 LOC106576860 other upstream 230325 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 334122 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 785567 11727284 ~ 11741584 (-)
G224869 NA other upstream 811056 11752851 ~ 11753680 (-)

Expression


Co-expression Network