G223942 (LOC106576860)


Basic Information

Item Value
gene id G223942
gene name LOC106576860
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11172120 ~ 11174367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU255996
caggtTCAAAACAGGTGCGCATTTTTATTAAGTGTTTGTTTCATTAGTAACACTGTTAATAACATTTAGAATGGTGTGGTACGTGGTCAACACATGTCCTTAGGCACGCTACAGGGGTCAAAGTTGAAGGTGTGGCTAACAGAAAGTCCTGAGGTCAGCCATTTTAGATCTTGCCGGGAAAGCTTCCGGCCTCTATCTGGTCGTCCCACTTGGCAACCCAGCTCATGGGACAGATACTCTTGTAGACCCTCTGGTACCAGTCACAGGGAGCCACATCCTGGCCTTTGTCTGACAAAGCTTTGTTGCACCTGTGGAAGtCCAGATAGTTCTGAAAGCAGTTGCGGGTCTGGTTGGTGTTGGGGAAGCGGGCGTCGAAGGGAGCCGTCCTGTAGTTCTTTATCTTCTCCTCAATAACGTCAGACATGCTGGCTAGCTGGCGGTCTCACTATGTCAACACTGAAACACATCGATAGGGAGATGTCATATAATGTCACGAAACTAAACATGAGTTGTACACTAGTCTCACGAGGCCATCCTTCCAAATCTGCCCTTGTTGACTGGCCTGGGCTTCCGAAGCTACCTATACACTTGCACACAGTAGGAAATGATCTTGTTGTCATGATAGAGGATGatagtagaggatgcctggatattttttaaaaatgccttcctaaccatcttaaataaac

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 6B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255996 True 689 TUCP 0.46 3 11172120 11174367

Neighbor

gene id symbol gene type direction distance location
rasip1 LOC106605844 coding downstream 7150 11151396 ~ 11164970 (-)
LOC110509048 il-11 coding downstream 84991 11079975 ~ 11087129 (-)
znf628 LOC106605829 coding downstream 92550 11068525 ~ 11079570 (-)
LOC110520907 nat14 coding downstream 105147 11061915 ~ 11066973 (-)
LOC110520834 LOC106575151 coding downstream 117950 11051867 ~ 11054170 (-)
LOC110509113 c209e coding upstream 184646 11359013 ~ 11363845 (-)
LOC110509134 LOC106576832 coding upstream 191056 11365423 ~ 11368231 (-)
LOC110510606 LOC106605835 coding upstream 196265 11370632 ~ 11386718 (-)
styk1b LOC106576787 coding upstream 250426 11424793 ~ 11432989 (-)
LOC110509171 LOC100196661 coding upstream 258751 11433118 ~ 11436628 (-)
G223924 NA non-coding downstream 63880 11104090 ~ 11108240 (-)
G223919 NA non-coding downstream 82562 11089346 ~ 11089558 (-)
G223898 NA non-coding downstream 132383 11038462 ~ 11039737 (-)
G223950 NA non-coding upstream 4088 11178455 ~ 11179883 (-)
G223949 LOC100846954 non-coding upstream 42198 11216565 ~ 11224830 (-)
G223969 LOC106605840 non-coding upstream 101550 11275917 ~ 11278628 (-)
G224676 NA non-coding upstream 172294 11346661 ~ 11353026 (-)
G224679 NA non-coding upstream 183805 11358172 ~ 11358416 (-)
LOC110508724 prpf31 other downstream 1148917 10019313 ~ 10024005 (-)
G223070 NA other downstream 1157228 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 1169226 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1488749 9679758 ~ 9689081 (-)
LOC110509576 LOC106576947 other upstream 552995 11727284 ~ 11741584 (-)
G224869 NA other upstream 578484 11752851 ~ 11753680 (-)
G224873 NA other upstream 621523 11795890 ~ 11796309 (-)
LOC110509592 LOC100136300 other upstream 634416 11808113 ~ 11811663 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009796 NA coding PESF01000053.1 PESF01000053.1 3764 ~ 4810 (-)