LOC110509113 (c209e)


Basic Information

Item Value
gene id LOC110509113
gene name c209e
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11359013 ~ 11363845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590085.2
AGCCTGGCTGAATGGACATCTCTCCAAGGACTAGATATCTCTCCAAGGACTAGATATCTCTCCAAGGACTAGATATCTCTCCAGACAGTTGTTCAGAACTCTGTCTCTtatcacacacacagcagagataGAGAGTAGAAGCAGCAGCAAACGGATTTTGGGACAGACTGAGTATTGTGTTACAGGAATTAATTATAAATCTAAAAGGGGCACGTTGCTatagagacggagagggaggttTTTTAAAACCACAGTGCATTTAGCCTTCACAGTACTTTACAGTCGCAGTCGGTGGGTCAGGAACAGCAGCAATGTATATCAAGTTTTGCCGTATTGTAGGAAGTGGAGGGAATGTCAAATTACCAGATGAGGCAAACGCAAAGTTTTCGGTTGAAGTGAAGAAGCAGCAAGGGAAAGACCTGCAGGTCCTGGGGAACGTTGGTCTGTACCGCGCAGTGTGTTTACTACTGTCTGTCATCTGTCTGGTTCTACTGCTCGTCATCATCATCCTCTGTGTCAAATTTCCATTCCAGCCTCAAGTCTGTCATGGTACTGAAAAAGGGATTGAGGCTAAAGAGAAGGGGAGTGTGACTGAAAAAGGGATTGAGGCTAAAGAGGAGAGGTTCCAGTCCACTGAGGTGTGCAGCCTGCAGACATGCCAAGCACAATACTTCCAACAACAGAGCCAGGtCCCTGCCTGCCACATGTGTGATGAAGGCTGGCTGCACTTTGAGAGCTCCTGCTACTTCCTCTCCAGAGACAGAATGAACTGGGACGAGAGCAGGGACGAGTGTAAGAAGAGAGGGGCAGATCTGGCTGTCATAACAAACAAAACAGTGCAGACCTTTCTAACGAAGAAGGGGAACCTGATGTACTGGATCGGCCTGAGACAGAGAACCAGGAACTGGGTTTGGGTCAACAACACTGCACTGGGACAAAGTTACTGGTCAGGATCCAACAGACAAGGGGATTGTGGGTTACTGACAGGAAGGGATCCTCCTGAGAGAAGCTGGAGCTCCACATCATGTGACCAGTACAGCTTCTACATCTGCCAGAGGGGGCGCTAAAGGACAGACTTCACCATCTGCCAGcagtcaccaaccctggtcctggagagctatACGATgtacaggcttttgttccagcccagcagtaAGACACATGATTTAGCTAGTCAATGAATCACCTTGATTAGCTGAATCATTTAAGTGTTGTACACCATGTAGGTCAGCAGGGTTGGTGGCCACTGCCATATTCCAACTAAGAAACCTGTCAATACGGATTCTCTTTTGACTTCTATCATTCAGTCCTATTCCATAGCCTTTTATCCCATGATTACACATCTCTATCAACAGCCTTTTAAACCTTGATTATACACTGTATGACCTAAGTCTATGTTATAATTCATTAGACATCCAGGTATAACCAATGATGGTAAATATAATCACATTACAGTTAGTTATGCCTTGTGAAGAACAATCAAGTTGGCCTGCCAGTTTCTGTTAGAGTTTGCACTAATGTAAAAGATTAACACTGTATATTGCACTCATTTGCTTGTTCTGCTGAGATGTTTTCTATATGTGTTCTCAATGCCTTTGAATGTGATAATGACCTACATGATTATGTGCATTAACCAATCATTATGTTTTAAGTACTGATTCACAATCCTGAAAGAAACAAACGTTTAATATCATTTGTCCCTGTAATAAAGAATCAGTTATTATACTGTC

Function

NR:

description
CD209 antigen-like protein E isoform X1

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590085.2 True 1730 mRNA 0.44 6 11359013 11363845

Neighbor

gene id symbol gene type direction distance location
rasip1 LOC106605844 coding downstream 194043 11151396 ~ 11164970 (-)
LOC110509048 il-11 coding downstream 271884 11079975 ~ 11087129 (-)
znf628 LOC106605829 coding downstream 279443 11068525 ~ 11079570 (-)
LOC110520907 nat14 coding downstream 292040 11061915 ~ 11066973 (-)
LOC110520834 LOC106575151 coding downstream 304843 11051867 ~ 11054170 (-)
LOC110509134 LOC106576832 coding upstream 1578 11365423 ~ 11368231 (-)
LOC110510606 LOC106605835 coding upstream 6787 11370632 ~ 11386718 (-)
styk1b LOC106576787 coding upstream 60948 11424793 ~ 11432989 (-)
LOC110509171 LOC100196661 coding upstream 69273 11433118 ~ 11436628 (-)
LOC110509245 LOC106576972 coding upstream 85413 11449258 ~ 11454366 (-)
G224679 NA non-coding downstream 597 11358172 ~ 11358416 (-)
G224676 NA non-coding downstream 5987 11346661 ~ 11353026 (-)
G223969 LOC106605840 non-coding downstream 80385 11275917 ~ 11278628 (-)
G223949 LOC100846954 non-coding downstream 134183 11216565 ~ 11224830 (-)
G223950 NA non-coding downstream 179130 11178455 ~ 11179883 (-)
G224692 NA non-coding upstream 27178 11391023 ~ 11392426 (-)
G224693 NA non-coding upstream 28769 11392614 ~ 11393104 (-)
G224699 NA non-coding upstream 43755 11407600 ~ 11407909 (-)
G224702 LOC106576792 non-coding upstream 49862 11413707 ~ 11414069 (-)
G224706 NA non-coding upstream 57900 11421745 ~ 11423947 (-)
G223942 LOC106576860 other downstream 184646 11172120 ~ 11174367 (-)
LOC110508724 prpf31 other downstream 1335810 10019313 ~ 10024005 (-)
G223070 NA other downstream 1344121 10012961 ~ 10014892 (-)
LOC110509576 LOC106576947 other upstream 363517 11727284 ~ 11741584 (-)
G224869 NA other upstream 389006 11752851 ~ 11753680 (-)
G224873 NA other upstream 432045 11795890 ~ 11796309 (-)
LOC110509592 LOC100136300 other upstream 444938 11808113 ~ 11811663 (-)
G224954 LOC106576536 other upstream 651081 12014926 ~ 12016101 (-)

Expression


Co-expression Network