LOC110509245 (LOC106576972)


Basic Information

Item Value
gene id LOC110509245
gene name LOC106576972
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11449258 ~ 11454366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590197.2
ccactaccacccctccccattcccctcctctctcctctcctctcccgctgCCTTGCACCTCTCTCAGTATGTGCTGTCAATAATTGATGGTTCTACAGACTCAAAGGGTAACAGGTCTAAAGAGGCAATCGCTCAtgcgtttatttatttatttaccattCCTATCTTTACACACACCCAGTCAGTAAGACCACTATCTGTGTGTCTTAGAGCACGGCGATCGATACCCAGCGACCCCTCTGTCTCTGCGTccatacatgtactgtatgtcagggCAGGGTCATGGGGGTTTGTTATCCATCAGTGCGTGTCCCTGCGGCCAAGATGGGGTTAATATTGCTCGTCTGGCTGACAGCAGGATATAGGGAAGGAAGTATAGAGATTAAATGAGTGAGAGGCagggggcagagaggagagaaagagagagagagagagagggaggggagtgatTTAATTCATCCCTAGGCAGTACTGATTGACTATAGCTAGCACACTGGCACTCACAAGCACTAACACCCACACAGAACgatggagagagacagcagaaATGAGAAGTTCTTCTCCAGAAAGAGAAGTTTCACTTTTGGGGCATATGGAGGTGTGGACAAGTTCATCAGTGAAAATGAGACTAGCAGACCAGAACCTTTAGAACACAGCATTCTGGATATTTCGGACTCCCCTACCAGCGAGACCAAACCGTTCCTTTCTGCTGGCAGCAACCAGAAGGTGACAGAGCTGTTTGAGATCATTGAGAAGTTGCAGAGCAGCAGGCTAGATGAACAGCGCTGTGAATTCCCTCTGCCTTTGAGGTCTCAGCTTTTGAAGATAGGTCGTGACCTTCCTCTGATCCTGCCTCCAAAGCTGGGTGGTTACTGGATAGACCCCCCGCTACAGAAGTTTGCTGAGACCAGTCCGACATCCTCTCATTATGGACTAGACCCAGAGACCTATGACATcatggagagagacagcgaggccACATACTACCAGGAGTTCTTCCGCTCACGATATCATCACTCGTTCACAGCAGTGGACCCCTCCCTGggacccctccttctctctgtctgtttggaggaagaagagaagaggctGAGAGTAATCCTGAGGATGAGGGAATGCTCTATGCATGGggttttctctgtgtctctgttcccAAACATCCCGTCTGCTGTGGAGCTGGCCAAGATGCTATGCGACAGTGTGACTGTGTCCAGATTTGATGTGGTCAGTTACCTCAAGgcACCAGATCTTATAACAGCATTTGATGAACACAGAGTGTCTCTGAATTTCAAGTTTGGTGTCTTGtatcagagagagggacagTTGACAGAGGAGGACATACTCTGTAACAATGAGGAAAGTGAAGAGTTTCAAGAATTCCTCTCTATTTTGGGAGCTACAGTCGCACTTCAAGGGTTCACTGGgtTCCGAGGAGGTTTGGACGTGTATCACGGCCAGACAGGAAATGATGCGGTCTTCACTTCCTTCCACGGCAGAGAGATCATGTTCCATGTGTCCACCAAATTGCCCTTCACAGAGGGCGATACACAACAGCTACAGAGGAAGAGACACATTGGCAACGACATCGTTGCTGTTGTTTACCAGGAGGGCCACACCCCTTTTCTGTCTGATGTCATCGGCTCACACTTCCTGCACTGTTTTCTAGTGGTCAGGAGGGTGAGGAAGAGAGTGGGGgacgagggggagggggaggaagcaggaggaggaggggtgttcCAGGTGTCAGTCACAGCCAGAGAGGATGTACCTCCCTttggtccctccctccctgatcctCCCATATTCACAGAGAGCTCCCTGTTGAGAGAGTTCCTTCTGACCAAGCTTATCAATGCAGAGATCTCCTGTTATAAGGCTGAGAGGTTCAGTAGACTGGAGCTGCGCACTCGTTCGTCCCTCCTGGAGGGTCTGCAGGCGGAACTGTCCACCCGCTCCCAGTGCATGATGGGAGATTCGCCTGTGTCCACCCTCTCGACTTCTGAGGGGATGAGGGGTGTAACTGAGGGGAGTGGAGGGTTCATCGAAAACTTTAAGAGAGCCATTAGGGTACGCAGTAATTCTTTTGACACTCTTGGGGGGCCTAGAAAGATGGGCGGGGTGCCACTCCCACAGAAGCCCAAGGCtgctacagagagagatggagagagtgAGTTGGCCTACAAGCCCCCTGAACCCAGCTTTCCGCCCACAGACAACCTGGGCTCCACAGAGGTCAAAGACTACTCCAGTCCCCAGGAGAATACGTAGGCAGACAGAATTATGTGTATATTTGAGTAATAACCAAGTGGATActttgtatgtacagtgcattcggaaagtattcagaccccttgactttttccacgttttgttacgttacagccttattctaaaattgatgaaatagt
>XM_021590199.2
ccactaccacccctccccattcccctcctctctcctctcctctcccgctgCCTTGCACCTCTCTCAGTATGTGCTGTCAATAATTGATGGTTCTACAGACTCAAAGGGTAACAGGTCTAAAGAGGCAATCGCTCAtgcgtttatttatttatttaccattCCTATCTTTACACACACCCAGTCAGTAAGACCACTATCTGTGTGTCTTAGAGCACGGCGATCGATACCCAGCGACCCCTCTGTCTCTGCGTccatacatgtactgtatgtcagggCAGGGTCATGGGGGTTTGTTATCCATCAGTGCGTGTCCCTGCGGCCAAGATGGGGTTAATATTGCTCGTCTGGCTGACAGCAGGATATAGGGAAGGAAGTATAGAGATTAAATGAGTGAGAGGCagggggcagagaggagagaaagagagagagagagagagggaggggagtgatTTAATTCATCCCTAGGCAGTACTGATTGACTATAGCTAGCACACTGGCACTCACAAGCACTAACACCCACACAGAACgatggagagagacagcagaaATGAGAAGTTCTTCTCCAGAAAGAGAAGTTTCACTTTTGGGGCATATGGAGGTGTGGACAAGTTCATCAGTGAAAATGAGACTAGCAGACCAGAACCTTTAGAACACAGCATTCTGGATATTTCGGACTCCCCTACCAGCGAGACCAAACCGTTCCTTTCTGCTGGCAGCAACCAGAAGGTGACAGAGCTGTTTGAGATCATTGAGAAGTTGCAGAGCAGCAGGCTAGATGAACAGCGCTGTGAATTCCCTCTGCCTTTGAGGCTTTTGAAGATAGGTCGTGACCTTCCTCTGATCCTGCCTCCAAAGCTGGGTGGTTACTGGATAGACCCCCCGCTACAGAAGTTTGCTGAGACCAGTCCGACATCCTCTCATTATGGACTAGACCCAGAGACCTATGACATcatggagagagacagcgaggccACATACTACCAGGAGTTCTTCCGCTCACGATATCATCACTCGTTCACAGCAGTGGACCCCTCCCTGggacccctccttctctctgtctgtttggaggaagaagagaagaggctGAGAGTAATCCTGAGGATGAGGGAATGCTCTATGCATGGggttttctctgtgtctctgttcccAAACATCCCGTCTGCTGTGGAGCTGGCCAAGATGCTATGCGACAGTGTGACTGTGTCCAGATTTGATGTGGTCAGTTACCTCAAGgcACCAGATCTTATAACAGCATTTGATGAACACAGAGTGTCTCTGAATTTCAAGTTTGGTGTCTTGtatcagagagagggacagTTGACAGAGGAGGACATACTCTGTAACAATGAGGAAAGTGAAGAGTTTCAAGAATTCCTCTCTATTTTGGGAGCTACAGTCGCACTTCAAGGGTTCACTGGgtTCCGAGGAGGTTTGGACGTGTATCACGGCCAGACAGGAAATGATGCGGTCTTCACTTCCTTCCACGGCAGAGAGATCATGTTCCATGTGTCCACCAAATTGCCCTTCACAGAGGGCGATACACAACAGCTACAGAGGAAGAGACACATTGGCAACGACATCGTTGCTGTTGTTTACCAGGAGGGCCACACCCCTTTTCTGTCTGATGTCATCGGCTCACACTTCCTGCACTGTTTTCTAGTGGTCAGGAGGGTGAGGAAGAGAGTGGGGgacgagggggagggggaggaagcaggaggaggaggggtgttcCAGGTGTCAGTCACAGCCAGAGAGGATGTACCTCCCTttggtccctccctccctgatcctCCCATATTCACAGAGAGCTCCCTGTTGAGAGAGTTCCTTCTGACCAAGCTTATCAATGCAGAGATCTCCTGTTATAAGGCTGAGAGGTTCAGTAGACTGGAGCTGCGCACTCGTTCGTCCCTCCTGGAGGGTCTGCAGGCGGAACTGTCCACCCGCTCCCAGTGCATGATGGGAGATTCGCCTGTGTCCACCCTCTCGACTTCTGAGGGGATGAGGGGTGTAACTGAGGGGAGTGGAGGGTTCATCGAAAACTTTAAGAGAGCCATTAGGGTACGCAGTAATTCTTTTGACACTCTTGGGGGGCCTAGAAAGATGGGCGGGGTGCCACTCCCACAGAAGCCCAAGGCtgctacagagagagatggagagagtgAGTTGGCCTACAAGCCCCCTGAACCCAGCTTTCCGCCCACAGACAACCTGGGCTCCACAGAGGTCAAAGACTACTCCAGTCCCCAGGAGAATACGTAGGCAGACAGAATTATGTGTATATTTGAGTAATAACCAAGTGGATActttgtatgtacagtgcattcggaaagtattcagaccccttgactttttccacgttttgttacgttacagccttattctaaaattgatgaaatagt
>XM_021590198.2
cctccactaccacccctccccattcccctcctctctcctctcctctcccgctgCCTTGCACCTCTCTCAGTATGTGCTGTCAATAATTGATGGTTCTACAGACTCAAAGGGTAACAGGTCTAAAGAGGCAATCGCTCAtgcgtttatttatttatttaccattCCTATCTTTACACACACCCAGTCAGTAAGACCACTATCTGTGTGTCTTAGAGCACGGCGATCGATACCCAGCGACCCCTCTGTCTCTGCGTccatacatgtactgtatgtcagggCAGGGTCATGGGGGTTTGTTATCCATCAGTGCGTGTCCCTGCGGCCAAGATGGGGTTAATATTGCTCGTCTGGCTGACAGCAGGATATAGGGAAGGAAGTATAGAGATTAAATGAGTGAGAGGCagggggcagagaggagagaaagagagagagagagagagggaggggagtgatTTAATTCATCCCTAGGCAGTACTGATTGACTATAGCTAGCACACTGGCACTCACAAGCACTAACACCCACACAGAACgatggagagagacagcagaaATGAGAAGTTCTTCTCCAGAAAGAGAAGTTTCACTTTTGGGGCATATGGAGGTGTGGACAAGTTCATCAGTGAAAATGAGACTAGACCAGAACCTTTAGAACACAGCATTCTGGATATTTCGGACTCCCCTACCAGCGAGACCAAACCGTTCCTTTCTGCTGGCAGCAACCAGAAGGTGACAGAGCTGTTTGAGATCATTGAGAAGTTGCAGAGCAGCAGGCTAGATGAACAGCGCTGTGAATTCCCTCTGCCTTTGAGGTCTCAGCTTTTGAAGATAGGTCGTGACCTTCCTCTGATCCTGCCTCCAAAGCTGGGTGGTTACTGGATAGACCCCCCGCTACAGAAGTTTGCTGAGACCAGTCCGACATCCTCTCATTATGGACTAGACCCAGAGACCTATGACATcatggagagagacagcgaggccACATACTACCAGGAGTTCTTCCGCTCACGATATCATCACTCGTTCACAGCAGTGGACCCCTCCCTGggacccctccttctctctgtctgtttggaggaagaagagaagaggctGAGAGTAATCCTGAGGATGAGGGAATGCTCTATGCATGGggttttctctgtgtctctgttcccAAACATCCCGTCTGCTGTGGAGCTGGCCAAGATGCTATGCGACAGTGTGACTGTGTCCAGATTTGATGTGGTCAGTTACCTCAAGgcACCAGATCTTATAACAGCATTTGATGAACACAGAGTGTCTCTGAATTTCAAGTTTGGTGTCTTGtatcagagagagggacagTTGACAGAGGAGGACATACTCTGTAACAATGAGGAAAGTGAAGAGTTTCAAGAATTCCTCTCTATTTTGGGAGCTACAGTCGCACTTCAAGGGTTCACTGGgtTCCGAGGAGGTTTGGACGTGTATCACGGCCAGACAGGAAATGATGCGGTCTTCACTTCCTTCCACGGCAGAGAGATCATGTTCCATGTGTCCACCAAATTGCCCTTCACAGAGGGCGATACACAACAGCTACAGAGGAAGAGACACATTGGCAACGACATCGTTGCTGTTGTTTACCAGGAGGGCCACACCCCTTTTCTGTCTGATGTCATCGGCTCACACTTCCTGCACTGTTTTCTAGTGGTCAGGAGGGTGAGGAAGAGAGTGGGGgacgagggggagggggaggaagcaggaggaggaggggtgttcCAGGTGTCAGTCACAGCCAGAGAGGATGTACCTCCCTttggtccctccctccctgatcctCCCATATTCACAGAGAGCTCCCTGTTGAGAGAGTTCCTTCTGACCAAGCTTATCAATGCAGAGATCTCCTGTTATAAGGCTGAGAGGTTCAGTAGACTGGAGCTGCGCACTCGTTCGTCCCTCCTGGAGGGTCTGCAGGCGGAACTGTCCACCCGCTCCCAGTGCATGATGGGAGATTCGCCTGTGTCCACCCTCTCGACTTCTGAGGGGATGAGGGGTGTAACTGAGGGGAGTGGAGGGTTCATCGAAAACTTTAAGAGAGCCATTAGGGTACGCAGTAATTCTTTTGACACTCTTGGGGGGCCTAGAAAGATGGGCGGGGTGCCACTCCCACAGAAGCCCAAGGCtgctacagagagagatggagagagtgAGTTGGCCTACAAGCCCCCTGAACCCAGCTTTCCGCCCACAGACAACCTGGGCTCCACAGAGGTCAAAGACTACTCCAGTCCCCAGGAGAATACGTAGGCAGACAGAATTATGTGTATATTTGAGTAATAACCAAGTGGATActttgtatgtacagtgcattcggaaagtattcagaccccttgactttttccacgttttgttacgttacagccttattctaaaattgatgaaatagt

Function

NR:

description
rap1 GTPase-activating protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590197.2 False 2408 mRNA 0.50 19 11449258 11454363
XM_021590199.2 False 2402 mRNA 0.50 19 11449258 11454363
XM_021590198.2 True 2408 mRNA 0.50 19 11449258 11454366

Neighbor

gene id symbol gene type direction distance location
LOC110509171 LOC100196661 coding downstream 12630 11433118 ~ 11436628 (-)
styk1b LOC106576787 coding downstream 16269 11424793 ~ 11432989 (-)
LOC110510606 LOC106605835 coding downstream 62540 11370632 ~ 11386718 (-)
LOC110509134 LOC106576832 coding downstream 81027 11365423 ~ 11368231 (-)
LOC110509113 c209e coding downstream 85413 11359013 ~ 11363845 (-)
fam131bb fam131b coding upstream 49501 11503867 ~ 11548741 (-)
LOC110509335 NA coding upstream 158847 11613213 ~ 11614838 (-)
LOC110509576 LOC106576947 coding upstream 272918 11727284 ~ 11741584 (-)
LOC110509520 lag-3 coding upstream 321689 11776055 ~ 11779268 (-)
LOC110509592 LOC100136300 coding upstream 353747 11808113 ~ 11811663 (-)
G224718 NA non-coding downstream 159 11448860 ~ 11449099 (-)
G224720 NA non-coding downstream 1311 11447621 ~ 11447947 (-)
G224717 NA non-coding downstream 3668 11445013 ~ 11445590 (-)
G224715 NA non-coding downstream 6130 11440772 ~ 11443128 (-)
G224712 NA non-coding downstream 9994 11437347 ~ 11439264 (-)
G224723 NA non-coding upstream 1330 11455696 ~ 11456054 (-)
G224724 NA non-coding upstream 2342 11456708 ~ 11457034 (-)
G224731 NA non-coding upstream 8486 11462852 ~ 11463793 (-)
G224732 NA non-coding upstream 11344 11465710 ~ 11466059 (-)
G224752 NA non-coding upstream 48607 11502973 ~ 11503395 (-)
G223969 LOC106605840 other downstream 170630 11275917 ~ 11278628 (-)
G223942 LOC106576860 other downstream 274891 11172120 ~ 11174367 (-)
znf628 LOC106605829 other downstream 375508 11068525 ~ 11079570 (-)
LOC110508724 prpf31 other downstream 1426055 10019313 ~ 10024005 (-)
G223070 NA other downstream 1434366 10012961 ~ 10014892 (-)
G224869 NA other upstream 298485 11752851 ~ 11753680 (-)
G224873 NA other upstream 341524 11795890 ~ 11796309 (-)
G224954 LOC106576536 other upstream 560560 12014926 ~ 12016101 (-)

Expression


Co-expression Network