RNA id: XM_021590199.2


Basic Information

Item Value
RNA id XM_021590199.2
length 2402
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110509245
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11449258 ~ 11454366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccactaccacccctccccattcccctcctctctcctctcctctcccgctgCCTTGCACCTCTCTCAGTATGTGCTGTCAATAATTGATGGTTCTACAGACTCAAAGGGTAACAGGTCTAAAGAGGCAATCGCTCAtgcgtttatttatttatttaccattCCTATCTTTACACACACCCAGTCAGTAAGACCACTATCTGTGTGTCTTAGAGCACGGCGATCGATACCCAGCGACCCCTCTGTCTCTGCGTccatacatgtactgtatgtcagggCAGGGTCATGGGGGTTTGTTATCCATCAGTGCGTGTCCCTGCGGCCAAGATGGGGTTAATATTGCTCGTCTGGCTGACAGCAGGATATAGGGAAGGAAGTATAGAGATTAAATGAGTGAGAGGCagggggcagagaggagagaaagagagagagagagagagggaggggagtgatTTAATTCATCCCTAGGCAGTACTGATTGACTATAGCTAGCACACTGGCACTCACAAGCACTAACACCCACACAGAACgatggagagagacagcagaaATGAGAAGTTCTTCTCCAGAAAGAGAAGTTTCACTTTTGGGGCATATGGAGGTGTGGACAAGTTCATCAGTGAAAATGAGACTAGCAGACCAGAACCTTTAGAACACAGCATTCTGGATATTTCGGACTCCCCTACCAGCGAGACCAAACCGTTCCTTTCTGCTGGCAGCAACCAGAAGGTGACAGAGCTGTTTGAGATCATTGAGAAGTTGCAGAGCAGCAGGCTAGATGAACAGCGCTGTGAATTCCCTCTGCCTTTGAGGCTTTTGAAGATAGGTCGTGACCTTCCTCTGATCCTGCCTCCAAAGCTGGGTGGTTACTGGATAGACCCCCCGCTACAGAAGTTTGCTGAGACCAGTCCGACATCCTCTCATTATGGACTAGACCCAGAGACCTATGACATcatggagagagacagcgaggccACATACTACCAGGAGTTCTTCCGCTCACGATATCATCACTCGTTCACAGCAGTGGACCCCTCCCTGggacccctccttctctctgtctgtttggaggaagaagagaagaggctGAGAGTAATCCTGAGGATGAGGGAATGCTCTATGCATGGggttttctctgtgtctctgttcccAAACATCCCGTCTGCTGTGGAGCTGGCCAAGATGCTATGCGACAGTGTGACTGTGTCCAGATTTGATGTGGTCAGTTACCTCAAGgcACCAGATCTTATAACAGCATTTGATGAACACAGAGTGTCTCTGAATTTCAAGTTTGGTGTCTTGtatcagagagagggacagTTGACAGAGGAGGACATACTCTGTAACAATGAGGAAAGTGAAGAGTTTCAAGAATTCCTCTCTATTTTGGGAGCTACAGTCGCACTTCAAGGGTTCACTGGgtTCCGAGGAGGTTTGGACGTGTATCACGGCCAGACAGGAAATGATGCGGTCTTCACTTCCTTCCACGGCAGAGAGATCATGTTCCATGTGTCCACCAAATTGCCCTTCACAGAGGGCGATACACAACAGCTACAGAGGAAGAGACACATTGGCAACGACATCGTTGCTGTTGTTTACCAGGAGGGCCACACCCCTTTTCTGTCTGATGTCATCGGCTCACACTTCCTGCACTGTTTTCTAGTGGTCAGGAGGGTGAGGAAGAGAGTGGGGgacgagggggagggggaggaagcaggaggaggaggggtgttcCAGGTGTCAGTCACAGCCAGAGAGGATGTACCTCCCTttggtccctccctccctgatcctCCCATATTCACAGAGAGCTCCCTGTTGAGAGAGTTCCTTCTGACCAAGCTTATCAATGCAGAGATCTCCTGTTATAAGGCTGAGAGGTTCAGTAGACTGGAGCTGCGCACTCGTTCGTCCCTCCTGGAGGGTCTGCAGGCGGAACTGTCCACCCGCTCCCAGTGCATGATGGGAGATTCGCCTGTGTCCACCCTCTCGACTTCTGAGGGGATGAGGGGTGTAACTGAGGGGAGTGGAGGGTTCATCGAAAACTTTAAGAGAGCCATTAGGGTACGCAGTAATTCTTTTGACACTCTTGGGGGGCCTAGAAAGATGGGCGGGGTGCCACTCCCACAGAAGCCCAAGGCtgctacagagagagatggagagagtgAGTTGGCCTACAAGCCCCCTGAACCCAGCTTTCCGCCCACAGACAACCTGGGCTCCACAGAGGTCAAAGACTACTCCAGTCCCCAGGAGAATACGTAGGCAGACAGAATTATGTGTATATTTGAGTAATAACCAAGTGGATActttgtatgtacagtgcattcggaaagtattcagaccccttgactttttccacgttttgttacgttacagccttattctaaaattgatgaaatagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256933 lncRNA downstream 159 11448860 ~ 11449099 (-) True G224718
TU256935 lncRNA downstream 1311 11447621 ~ 11447947 (-) True G224720
TU256932 lncRNA downstream 3668 11445013 ~ 11445590 (-) True G224717
TU256930 lncRNA downstream 6130 11440772 ~ 11443128 (-) True G224715
TU256927 lncRNA downstream 9994 11437347 ~ 11439264 (-) True G224712
TU256938 lncRNA upstream 1333 11455696 ~ 11456054 (-) True G224723
TU256939 lncRNA upstream 2345 11456708 ~ 11457034 (-) True G224724
TU256946 lncRNA upstream 8489 11462852 ~ 11463793 (-) False G224731
TU256951 lncRNA upstream 8741 11463104 ~ 11463385 (-) True G224731
TU256953 lncRNA upstream 11347 11465710 ~ 11466059 (-) True G224732
XM_021590187.2 mRNA downstream 12630 11433118 ~ 11436628 (-) True LOC110509171
XM_021590181.2 mRNA downstream 12631 11433118 ~ 11436627 (-) False LOC110509171
XM_021590166.2 mRNA downstream 12644 11433118 ~ 11436614 (-) False LOC110509171
XM_021590159.2 mRNA downstream 12711 11433118 ~ 11436547 (-) False LOC110509171
XM_021590195.2 mRNA downstream 12735 11433118 ~ 11436523 (-) False LOC110509171
XM_036968945.1 mRNA upstream 49504 11503867 ~ 11522257 (-) False fam131bb
XM_036968951.1 mRNA upstream 49504 11503867 ~ 11522257 (-) False fam131bb
XM_021590216.2 mRNA upstream 49504 11503867 ~ 11548741 (-) False fam131bb
XM_021590220.2 mRNA upstream 49504 11503867 ~ 11548741 (-) False fam131bb
XM_021590221.2 mRNA upstream 49504 11503867 ~ 11548741 (-) False fam131bb
TU256045 other downstream 170630 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 274891 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 375508 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1426055 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 272999 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 298488 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 298488 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 298488 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 341527 11795890 ~ 11796309 (-) True G224873

Expression Profile