RNA id: XM_021590196.2



Basic Information


Item Value
RNA id XM_021590196.2
length 791
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110509171
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11433118 ~ 11436628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAACGTTTTTACTTGCAATGCAATGACAATGTTACAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU256920 lncRNA downstream 9171 11421745 ~ 11423947 (-) True G224706
TU256915 lncRNA downstream 19049 11413707 ~ 11414069 (-) True G224702
TU256910 lncRNA downstream 25209 11407600 ~ 11407909 (-) True G224699
TU256903 lncRNA downstream 40014 11392614 ~ 11393104 (-) True G224693
TU256902 lncRNA downstream 41096 11391165 ~ 11392022 (-) True G224692
TU256927 lncRNA upstream 1165 11437347 ~ 11439264 (-) True G224712
TU256930 lncRNA upstream 4590 11440772 ~ 11443128 (-) True G224715
TU256932 lncRNA upstream 8831 11445013 ~ 11445590 (-) True G224717
TU256935 lncRNA upstream 11439 11447621 ~ 11447947 (-) True G224720
TU256933 lncRNA upstream 12678 11448860 ~ 11449099 (-) True G224718
XM_021590140.2 mRNA downstream 129 11424793 ~ 11432989 (-) True styk1b
XM_036968814.1 mRNA downstream 46400 11370632 ~ 11386718 (-) True LOC110510606
XM_021590107.2 mRNA downstream 64887 11365423 ~ 11368231 (-) True LOC110509134
XM_021590085.2 mRNA downstream 69273 11359013 ~ 11363845 (-) True LOC110509113
XM_036968754.1 mRNA downstream 268148 11151396 ~ 11164970 (-) True rasip1
XM_021590197.2 mRNA upstream 13076 11449258 ~ 11454363 (-) False LOC110509245
XM_021590199.2 mRNA upstream 13076 11449258 ~ 11454363 (-) False LOC110509245
XM_021590198.2 mRNA upstream 13076 11449258 ~ 11454366 (-) True LOC110509245
XM_036968945.1 mRNA upstream 67685 11503867 ~ 11522257 (-) False fam131bb
XM_036968951.1 mRNA upstream 67685 11503867 ~ 11522257 (-) False fam131bb
TU256045 other downstream 154490 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 258751 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 359368 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1409915 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 291180 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 316669 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 316669 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 316669 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 359708 11795890 ~ 11796309 (-) True G224873

Expression Profile