RNA id: TU257091


Basic Information

Item Value
RNA id TU257091
length 811
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G224852
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11701895 ~ 11702705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAAAGAGAAaccgtgagagagagaagtgaatgCCGGTGgcagagagtgagggagtgagtgtaCCTGTCCCCACTCTGGGTGATGAGTCTCCTGCAGGTCTCCATCTGCACATCCAGGCCTCTCTTCATAGAACACATCTCCATGTATTCATGTAGGTGACGGTTCATATCACTCTTAGCTGTAGCCAAGTCATACTGGGGAGAAACACATCACTCTTAGCTGTAGCCGAGTCATACTGGGGAGAAACACATCACTCTTAGCTGTAGCCGAGTCATACTGGGGAGAAACACATCACTCTTAGCTGTAGCCAAGTCATACTGGGGAGAAACACATCACTCTTAGCTGTAGCCGAGTCATACTGGGGAGAAACACATCACTCTTAGCTGTAGCCGAGTCATACTGGGGAGAAACACATCACTCTCAGCTGTAGCCGAGTCATACTGGGGAGAAACACATCACTCTTAGCTGTAGCCGAGTCATACTGGGGAGAAACACATCACTCTGAGCTGTAGCCGAGTCATACTGGGGAGAAACACATCACTCTGAGCTGTAGCAGAGTCATACTGGGGAGAAACACATCACTCTTAGCTGTAGCAGAGTCATACTGGGGAGaaacacactgtcaaacattAACATAGCCTTAGACCCCCCCACCACACCTCAATCTGGTCGATGGTCTCTTGGTATTCTTTCTCCCTGGATTTGAATAAGTCCTCAGTGTCATTAATCACCTTCTCCAGACACTGGTCTTCTTGctgagagggcgagagagaaggaaggaaggaggggagagaaggaaggaaggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257089 lncRNA downstream 6035 11695615 ~ 11695860 (-) True G224850
TU257087 lncRNA downstream 8180 11693480 ~ 11693715 (-) True G224848
TU257028 lncRNA downstream 8568 11668849 ~ 11693327 (-) False G224797
TU257031 lncRNA downstream 8568 11668849 ~ 11693327 (-) True G224797
TU257029 lncRNA downstream 28695 11654879 ~ 11673200 (-) False G224797
TU257077 lncRNA upstream 216 11702921 ~ 11704140 (-) True G224838
TU257073 lncRNA upstream 3430 11706135 ~ 11708248 (-) False G224836
TU257074 lncRNA upstream 3430 11706135 ~ 11708248 (-) False G224836
TU257075 lncRNA upstream 3430 11706135 ~ 11708248 (-) True G224836
TU257107 lncRNA upstream 47348 11750053 ~ 11750752 (-) True G224867
XM_021590257.2 mRNA downstream 87057 11613213 ~ 11614838 (-) True LOC110509335
XM_021590216.2 mRNA downstream 153154 11503867 ~ 11548741 (-) False fam131bb
XM_021590547.2 mRNA upstream 24579 11727284 ~ 11737850 (-) False LOC110509576
XM_036969073.1 mRNA upstream 24579 11727284 ~ 11738035 (-) False LOC110509576
XM_036969079.1 mRNA upstream 24579 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA upstream 24579 11727284 ~ 11738056 (-) False LOC110509576
XM_021590439.2 mRNA upstream 73350 11776055 ~ 11779268 (-) True LOC110509520
TU256045 other downstream 423267 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 527528 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 628145 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1678692 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 24657 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 50146 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 50146 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 50146 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 93185 11795890 ~ 11796309 (-) True G224873

Expression Profile