RNA id: TU257031


Basic Information

Item Value
RNA id TU257031
length 3198
lncRNA type read_through
GC content 0.45
exon number 8
gene id G224797
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11654879 ~ 11693327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttttttttttTTTACACAGAGGACTTTTATTCCACTTCTGAATGAAGCAAGTTCAACAGAAAATGTCGTCACACCCAGATTCCATCTCACCTTTCACAAGACCAGAAAAGGGTCTTCacattacaaaaataaaatatatagttGTGATTGGTATTTTTTATGTGGGTAACTTTCTCAGGCAAGGGCGATAGTCCAATCGAATGGGAAATATGTGGTCACATGACGTAGTTCGGTAGCGTTTGGTTGGTTGCTTTACTCCTTGGTGGCCATGTGAGCCATCAGGTCAATGACGCGGTTGCTGTAGCCAAACTCATTGTCatacctgTGACCAGCTTGACGAAGTGGTCGTTCAGAGCAATGCCAGCGCCGGCATCAAAGATGGAGGAGTGGGTGTCGCCGTTGAAGTCTGAAGAGACAACCTGTTGCTCCGTGTAGCCGAGAATTCCCTTCATGGGTCCATCGGCGGCAGCCTTGACAACCTTCTTGATGGCGTCGTAGCTGGCCTGCTTCTCCAGACGGACGGTCAGGTCCACCACTGAGACGTTGGGGGTGGGGACACGGAAGGCCATGCCAGTGATCTTGCTGTGAGGAAGAAGAGGGGGTGACAGCAGCATAAGGTCAAAGTTAAACTTACTCCTCTACAGTTGATATACAGACATAACGACTGGGTCTTAGATAAATGTCTGTTTCATTGCCATACATTTTACTGTTGATTGAACTGTAGTAATGGCTGACTACTAGTGTTATAAATGTGTAACTGGTTAGTTATTATACTAGTGTTTTACTGGTGTCTAGTTAGAGGTTGTGTTACTAGTGAATGTACAGCTGTATTGTAATAGTGTTTACTGGTGGTCAGTTAGAGGTTGTGAACTTGTGATACACGTATTATAATCGTCTCTTGTTTTACTGGTTGTTATTAGTTATGTGGTACTGACCCGTTCAGCTCGGGGATGACCTTGCCGACAGCCTTGGCTGCTCCGGTGGAGGCAGGGATGATGTTCTGGCTGGCACCACGTCCATCCCTCCACAGCTTTCCAGAAGGACCATCAACAGTCTTCTGGGTGGCGGTGACGGCGTGAACGGTGCTCTGAGATAGAGATGTTAAGggaagggagatgagagaggtgtGATCCACATTAAGGAGGTACAGAAGTGGTAGTGGGGGACGGCTGGATAAGAAAGACAGATGGTGTGTTGGTGATCTTAAAAACAGTCCATCCCTTGTTCTGTACTGTTAGTGTTTTGGGTCGGTGTGAAACCTGTCGTTATGTCAGATTATGCCCTCTCTAGGTGATTGTTCCCAGGTGTTGCGTTTTAATCCGTACCATCAGACCCTCAATGATGTGGTAGTTATCGTGGATGACCTTGGCCAGGGGAGCCAGGCAGTTGGTTGTGCATGACGCATTGCTGACAACCTTGAGGGAGTTCTCGTACTTCTCGTGGTTGACGCCCATGACGAACATGGGTGCATCAGCACTGGGAGCAGAGATGACAACCCTCTTGGCACCGCCCTTCAGATGggtAGAGGCCTTCTCAATGGTGGTGAAAACACCTGTTGACTCAACTACATAGGTGGCACCAGCATCTCCCCACTTGATGTTAGCTGGGTCTCTCctgagaacgagagagaagagGTTCAGGGTTATGTTATGAGGAAGCAGAGCACCATAGACTAATAGACTATCATTTATATTGTTATAGATTCCACAAGGGGGCGCCATTCCATAAGGCCACAAGGGACTTCAGTTCTCTCCTGGATATTCTACAGATGCTGACCTGATTTGTATGAATTTCTTTAGATGTGGAAAACAAATGTGAATTTGTTATTAAATGAACTCACTCGTGGAACACAGTGATTTTGTGTCCATCGATGACCAGCTTGCCACCCTCAGCCTTGACCTCACCGTGGAAACGTCCGTGGGTGGAGTCATACTTGAACATGTAGACATGTAGTCCAGGTCGATGAAAGGGTCGTTGATGGCAACAATCTCAACTCCCTTCTTGGAGTGGAATGCAGCACGGGTCACCAGACGCCCGATACGGCCGAATCTGGGGGACAAGACGATTTATTCCATTAATCATTGATGTGACAAGTCACACCCAGTCCTCAACAATACTATGGCGTTTCATAAACCTCTCgccattgaaaaacaaatgaagttGTGGTAGtcccccatctgtctctcctgtatTCTAATGTAACAGCTGGTGCCTTCCTCAGTAGGAAGCCACGTTTCAAAGGTCGCAAATAGAAATGTCATGTATACAACTGAACTAACATCTGACTTGTGTAGCACCTGAAGCAAAAGACTGGATATAGCTTTCAGAGAAATCTCAAATGAACATGTGGGAACCTCAAAATACTGTATTTCCAGAGAAAGAGGACAGGGTTCAGGGATGTGTGTATCGTAGCCAGCAGAGTAAACAGGACTGAGGCTTTACTCTGTGGTGTAAAGTCCTGTCTGCCCCCCATGTGGTAATCCTCCACCATCAAGTGAGAGGCCTGTTTGATTAGTAGTTACTTTTTAACTAGACAATgaaggtcagacagacaggctctgatacacactgtcctcagaggtggaggagagaggataggagggggAAATGCAGACCTCACAGATGTGAGGCCAAAGATACATTTTCAACTGTAGACTGGACAATAAAACTGTTCTATTCAACTAAGCATAAGGTGATCACTTGTCTACATGTGAAAACATCACAGAGAACAAGTGTGTTGTGTTAGTTAAGGGGTTAAATGAAAATGTATCTTACCCATTGACACCTACTTTCACCATTTTGCCTGAGTTGGTCTAGTCCTCtgtggggggagagaagaggtagAAGGAGAGACAGTAGCTATTAAAACACACATTGACCATACATTATGGTTTCTGGGGATTTCCATACTTTATGGCATAGAACTTTGCTACAGAGTTACAGGTTTAAGGTAAGCAGAGGCATAGAGAACATAGCATAGCATAAGAGAATAATAGAGTATGCCATAGGTTCCCTTGAATAGATAACAGTATCTACACAAATGACTGCAACTCATAGTAAGTTCATGCAAAGTACACTAGGCCAATAGACCAAGACACACATTTAAAAGAACAGCTAAATGTTTTAAACTGGAGTAAATGTGTAAGAGTCTATTTAAGCAAATTGCAACATGTTGTAAGCAACAGTTATGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257034 lncRNA downstream 9784 11646510 ~ 11659065 (-) True G224800
TU257040 lncRNA downstream 14531 11653263 ~ 11654318 (-) True G224806
TU257056 lncRNA downstream 50555 11617251 ~ 11618294 (-) True G224821
TU257057 lncRNA downstream 51844 11616452 ~ 11617005 (-) True G224822
TU257022 lncRNA downstream 79881 11580307 ~ 11588968 (-) True G224795
TU257087 lncRNA upstream 153 11693480 ~ 11693715 (-) True G224848
TU257089 lncRNA upstream 2288 11695615 ~ 11695860 (-) True G224850
TU257091 lncRNA upstream 8568 11701895 ~ 11702705 (-) True G224852
TU257077 lncRNA upstream 9594 11702921 ~ 11704140 (-) True G224838
TU257073 lncRNA upstream 12808 11706135 ~ 11708248 (-) False G224836
XM_021590257.2 mRNA downstream 54011 11613213 ~ 11614838 (-) True LOC110509335
XM_021590216.2 mRNA downstream 120108 11503867 ~ 11548741 (-) False fam131bb
XM_021590547.2 mRNA upstream 33957 11727284 ~ 11737850 (-) False LOC110509576
XM_036969073.1 mRNA upstream 33957 11727284 ~ 11738035 (-) False LOC110509576
XM_036969079.1 mRNA upstream 33957 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA upstream 33957 11727284 ~ 11738056 (-) False LOC110509576
XM_021590439.2 mRNA upstream 82728 11776055 ~ 11779268 (-) True LOC110509520
TU256045 other downstream 390221 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 494482 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 595099 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1645646 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 34035 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 59524 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 59524 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 59524 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 102563 11795890 ~ 11796309 (-) True G224873

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU11918 False 4020 lncRNA 0.39 5 NC_047595.1 18192134 ~ 18196685 (-)