RNA id: TU11918


Basic Information

Item Value
RNA id TU11918
length 4020
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G10064
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18188563 ~ 18196761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACACCACAAGTCAACAGTTCTCTCACAGAGGACTTTTATTCCATCACAAGTTTTTGCAGACTGATGCCttcaatattttaattcattttgaatTAAGCCTCACACAAACAGAACAGGGCTTTTTCCCCCcccatataaaaaaataattggtcTACAACAAAGCATGGCACTTCAAGCAGTTTGTAGTCAGTTGGGAGAATAACCAAGTTGTCAGATAGGTGGCATTTACTCCTTGGATGCCATGTAGGCCATCAGGTCACAGACACGGTTGCTGTAGCCAAACTCTACATACCATGACACCAGCTTAACAAAGTGATCATTCAGGGCAATTCCAGCACCTGCATCAAAGATGGAGGAGTGAGAATCTCCATTGAAGTCTGTGGACACCACCTGTGAGAAAGCAAGAAAGGTAAAGAGTGCTCGATGCAATCAAGGCAACACTGACTGCATATCAGCAATATGCAGTCAATGTTTCCATACAAACTAGAAAACTGTCAATTTCCTTTTCACACCTAAACAATTCACTCAGTGGCAAAATTTGACAAATGCTCATACCAACACATCCAGATACGTTTTAATACTTTAATGGGTCAACAAGGAGAAACCAGGCCAAGCACGCACATGCCTAATAAATGGCCAATGAAAGAATACAGCATGCACTTAGTCTTCATTAACTGGAAATAGTTTAGCTTGGACAACACCGATTTGGCAAGTTCCTCATATTATTGGCAACTAGGATTACAACAATACATGCTTGATGCCACAGAATCCTATTAATAGGAAACCAGCTTTTCATGAGAATTTATACCAATCTATCAGTGTTATACCTTTAGTATTCCTATACACCAGACTGCCAGAATACACAGCTTACATGTAGTGCTGAACATTTTAAGCATGGTTTTAGGTAAATTTAGGCCAAGATTATATTTAAATCAGGGTGAATGTGGCACCTACCTGGTGGTCTGTGTATCCCAGAATGCCCTTCATGGGGCCCTCAGCTGCAGCCTTTACCACCTTCTTGATTTCATCATATTTTGCCTGCAGAGCAAAAAGGAAGTGAGGAATTACTGTTACAGCCATTTCCTCTCAAATGTCTAAAAAAGAAGCGAAAATTAATGTCTGAAGTTTAGATAATGAATATGTTGCCAGAATGTCAAATTATGGAAAATGATTCTTTGACCCAACTATAGATTTCAAATTGGACAAATGAATGTGCATCAGGCACAGGCACTCAGTGATTTACTCACAGGCTTCTCCAAACGGACAGTCAAGTCAACCACTGACACGTTGGGAGTGGGGACACGGAAAGCCATACCAGTCAGCTTCCTGAAACAAAAAGGGAAGGGTTAGAACCTTTGTAACAGAAACAACTGGAGAACAGATCTCTTTACTAATGTCTAAACCACAAGTAGAGCCAACCTCACTGAAGAGATgtgctttaaattatttaactaatgtcatttaatttcacaaaCTGGGGGCAAAATTTAAACCgatcagccacaacattaaaaccacctgcctaattgtgtaggtccccctaaTGCTGCCAAAATGGCTCGGACCCATTGAGGTGTTCAgcggtatctggcaccaagactttagcagcaggcCATAAAGTCCTGCAAGTtctgaggtggggcctccatggaacagtctttgtccagcacatctcacagatgctcaattggattgagatctggggaatttggaggccaagtcaacaccttgaatggccatgttcctcaaaccattcctgaacaatttttgcgaTGTGGAAaaattatcctgctgaaagaggccactgcctttagggaataccgttgccatgaaggggtgtactttgtctgcaacaatgtttaggtaggtggtacttgtcaaagtaacatccacatgaaggtcaggacccaaggtttccccaGCAGAAtactgcccagagcatcacactgcctccaccagcttgccttcttcctataGTGCATCCTGTTGCCATCTCTTTATAAGGTAAAGGTAAGAAGGTGGAAAACGCAGAAGGCGGCGCAGGGAACGCAGGCAAAAGCGGGTCTGTCGAGCAGGCCATCGAGCAAGGCTAAAGAGAGCGCCTCTTAAGTCAGCGCTGCCTAGCGTCTTCCTCACAAATGTCAGGTCACTAAACAAAATGGAAGAACTGGAACTGATCATATCTATGAAGAAAACAGTAAGAGATTGCTCCCCAATAATTATCAGAGACATGGCTCCACTCAGGGTCCCGGATGATGCTACCGCGCCAGCAGGCCACACAGTGCACCGAGCCGATATATTCCACCAAGTGCCAACACCAAACAGGCACTGGAAGTTTTGTTGGCAACCATCAACAAATTGCAGATCTCCTACCCTGATGGCATTTTCATTATAGTGGGAGACTTTAATCAAGCAAATCCTTGACATTTGTTGACATTGTTTGCTGTACATGCCTAGTTTTGCACCATTTGCTGTAtatattccttacttactgcACTGTATTGATGTGTGCACACATGTTCACTCTTTGTACTGGGAGCCAAAAATTTTCGATGTACATCTGTACAATGACAAAGGCATTCTAATTCTAAATGTAAAAGACGACATGATTCAGACCAGCCCACactcttccattgctccatggtccagttctgatgctcacatgcccattgtaggcattTTCAGCAGtcgacaggggtcagcatgggcactcttactggtctgcagctacacagccccagttgcagcaagctgcaatgcacacTGTTTTTAGACACTTTTATTGTAGCCAACATTAACTTACAAAATTCTGTGctaccagatgggctagccttcactccccatgcatcaatgagccttgggcacccaggACCCTGTTGCCAGTCCAACAGTTGTCCTTCCTTATACTacatttggtaggtactaaccactgcataccacgAACACTAAAAGACCTGCCATTCTGGAGATGCTCTCACCCAGTCATCTAGCTATCACAATTTGATGCTTGTCAAAGTCACCAAGACCCTTATGCTtgcctatttttcctgcttccagcacatcaacttGACTGAGAACTTGACTgtgttcatttgctgcctaatgtctggcacctgtcaaggggtgaaTGTAACAAGATTCAATGTATTTCACTTCACCCATCaatgcttttaatgttatggctgaagAAATTAAGACTGCCTTTTcagatttggggaaaaaaaagcatcttaaGACAGAAGTCAAGAACTAAATTTAAGGCCAGTCAAACACTGGTATCCTGAATTTGGGATGACAAATGGTTGTATGGTGAAACTGACCCGTTGAGTTCAGGAATGACTTTACCCACAGCCTTGGCAGCACCAGTAGAGGCTGGGATGATGTTCTGGCTGGCACCACGGCCATCTCTCCACAGTTTACCAGAAGGACCATCAACAGTCTTCTGGGTGGCTGTGATAGCATGGACAGTGCTCTACAAGGGGGAATTAAAAATCCAGATTAAAACACAGGAAAGGGGGTAATGGACAAAGGATGAGTTCCTGAGGAGTCACCACATGGCTGTTCTGATAAAGTAAAATTCTTGGAGTATGGAAAAATGACTATTCACTTACCATAAGACCCTCAATGATGACAAAGTTATCATTGATGACCTTGGCCAGAGGAGCCAGGCAGTTGGTAGTGCAAGATGCATTCTGACTACTTTAAGGGACTTGTCGTATTTCTCATGGTTGACGCCCATGACAAACATTGGGGCATCAGCACTGGGTGCAGAGATGATGACTCTCTTGGCACCACCTTTCAAGTGAGAGAGGCCTTCTCAATGGTGGTGAAGACACCAGTGGATTCCACAACATACTCAGCACCAGCATCACCCCACTTAATGTTGGCTGGGTCCCTTCGCTGAAAACTGTGATGACATGTCCATCAATGACCAGTTTGCCACCCTCAGCCTTGACCTCTCCCTTGAACTTTCCATGGGTGGagtcatactggaacatgtaCACCTGTCCAGGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11934 lncRNA downstream 22793 18127968 ~ 18169341 (-) True G10070
TU11933 lncRNA downstream 23372 18168329 ~ 18168762 (-) True G10069
TU11929 lncRNA downstream 31417 18153390 ~ 18160717 (-) True G10066
TU11883 lncRNA downstream 98486 18092774 ~ 18093648 (-) True G10035
TU11906 lncRNA downstream 101962 18089561 ~ 18090172 (-) True G10057
TU11945 lncRNA upstream 288 18196973 ~ 18197288 (-) True G10081
TU11946 lncRNA upstream 633 18197318 ~ 18198033 (-) True G10082
TU11947 lncRNA upstream 1442 18198127 ~ 18198346 (-) True G10083
TU12005 lncRNA upstream 158226 18354911 ~ 18355952 (-) True G10121
TU12008 lncRNA upstream 164122 18360807 ~ 18361030 (-) True G10124
XM_026926504.2 mRNA downstream 26999 18163640 ~ 18165135 (-) True gtf3c6
XM_026926138.2 mRNA downstream 73631 18093724 ~ 18118503 (-) False fam131bb
XM_026926669.2 mRNA upstream 23441 18220126 ~ 18227619 (-) True cd27
XM_026926670.2 mRNA upstream 23441 18220126 ~ 18225944 (-) False cd27
XM_026926197.2 mRNA upstream 58937 18255622 ~ 18259003 (-) True LOC113533828
XM_026926888.2 mRNA upstream 72369 18269054 ~ 18274724 (-) True rpl18
XM_026926807.2 mRNA upstream 79662 18276347 ~ 18280362 (-) False si:ch211-120k19.1
TU11932 other downstream 17568 18172187 ~ 18174566 (-) True G10068
TU10747 other downstream 1444583 16744702 ~ 16747551 (-) True id4
XR_003403482.1 other downstream 1691661 16498358 ~ 16500473 (-) True LOC113534214
TU9776 other downstream 3052266 15137000 ~ 15139868 (-) True G8271
TU9502 other downstream 3646842 14542769 ~ 14545292 (-) False LOC113534155
TU12167 other upstream 498369 18695054 ~ 18700986 (-) False ensab
XR_004579128.1 other upstream 630128 18826813 ~ 18832204 (-) False rrnad1
TU12662 other upstream 1345714 19542399 ~ 19547243 (-) False ccn4b
trnaq-cug_1 other upstream 1480496 19677181 ~ 19677252 (-) True trnaq-cug_1
trnaq-cug_2 other upstream 1483710 19680395 ~ 19680466 (-) True trnaq-cug_2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU257031 True 3198 lncRNA 0.45 8 NC_048567.1 11668849 ~ 11693327 (-)
eurasian perch (Perca fluviatilis) TU257031 False 246 lncRNA 0.48 2 NC_053129.1 34426352 ~ 34431070 (-)