G10069


Basic Information

Item Value
gene id G10069
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18168329 ~ 18168762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU11933
tcgtCTTCACTCTCCTGTTCTGCGGCTTCCTGACGTTTTTTCTGTTTCCTGGCAGCTCGTTCAATAGGTAGCAGCTCCTCTCCATCACTGCCTGCCTCCTCCTGTTCTTCTCCTTCACTGCTATCTTCCATCGCTCCATAGTCATCGACCAtatcatcgtcgtcatcatcatcatcatcatcatctgcctCAACttgttctttttctccttcctctATATCCTctacttcatcatcatcatcttcctcttcctcccaCTGGCTGTCGCTGTCCTCGTCCCCTTCTGAATGGTCAATTTTGCGCTTTCGCTTTGCTGGTGTCAGCCATTCGCTGTTGTCATCAGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU11933 True 344 lncRNA 0.49 2 18168329 18168762

Neighbor

gene id symbol gene type direction distance location
gtf3c6 gtf3c6 coding downstream 3194 18163640 ~ 18165135 (-)
fam131bb LOC108268385,LOC108429024 coding downstream 49826 18093724 ~ 18118503 (-)
arhgef5 LOC108268405,LOC107699944,LOC107748790,LOC107744673,LOC107685510,LOC107596678 coding downstream 121164 18031588 ~ 18047165 (-)
si:dkey-87o1.2 NA coding downstream 180703 17983058 ~ 17987626 (-)
them4 LOC108272246 coding downstream 192550 17968854 ~ 17975779 (-)
cd27 NA coding upstream 51364 18220126 ~ 18227619 (-)
LOC113533828 NA coding upstream 86860 18255622 ~ 18259003 (-)
rpl18 rpl18,LOC107748941 coding upstream 100292 18269054 ~ 18274724 (-)
si:ch211-120k19.1 LOC108268252 coding upstream 107585 18276347 ~ 18280362 (-)
myh14 LOC108272574,LOC108429041 coding upstream 118320 18287082 ~ 18323624 (-)
G10066 NA non-coding downstream 7612 18153390 ~ 18160717 (-)
G10035 LOC108268386 non-coding downstream 74681 18092774 ~ 18093648 (-)
G10057 NA non-coding downstream 78157 18089561 ~ 18090172 (-)
G10056 NA non-coding downstream 79227 18088874 ~ 18089102 (-)
G10055 NA non-coding downstream 80844 18087021 ~ 18087485 (-)
G10081 NA non-coding upstream 28211 18196973 ~ 18197288 (-)
G10082 NA non-coding upstream 28556 18197318 ~ 18198033 (-)
G10083 NA non-coding upstream 29365 18198127 ~ 18198346 (-)
G10121 si:dkey-27n14.1,LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760 non-coding upstream 186149 18354911 ~ 18355952 (-)
G10124 NA non-coding upstream 192045 18360807 ~ 18361030 (-)
gask1a fam198a other downstream 771356 17377902 ~ 17396973 (-)
id4 id4 other downstream 1420745 16744702 ~ 16747584 (-)
cremb LOC108269046,LOC105019435,LOC108428923 other downstream 1617686 16533589 ~ 16550643 (-)
grik2 grik2,LOC108271497,LOC101466412 other downstream 2482184 15539126 ~ 15686145 (-)
G8271 ppp1r8 other downstream 3028461 15137000 ~ 15139868 (-)
G10068 nop2,LOC107685519,LOC107749104,LOC107699935,LOC104957145 other upstream 3425 18172187 ~ 18174566 (-)
G10064 NA other upstream 19801 18188563 ~ 18196761 (-)
sema6e sema6c,sema6e,LOC108429044,LOC107587820 other upstream 214826 18383588 ~ 18507523 (-)
ensab ensab,LOC108268136,LOC108441925,LOC103045558,LOC107741750,LOC107587831,LOC107663348,LOC107597988,LOC107732479 other upstream 526274 18695036 ~ 18701005 (-)
rrnad1 rrnad1 other upstream 656619 18825381 ~ 18832204 (-)

Expression


Co-expression Network