rrnad1 (rrnad1)


Basic Information

Item Value
gene id rrnad1
gene name rrnad1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18825381 ~ 18832204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926204.2
GTAGCGCACAATATCGGATTGAACCATAGTTTTAGCAACTCCAGCTAGTTGTAGTTGCAGGCATTTGTCTCCAGTGGCTCTTTGACAGTAAACCAGATTCTTGATGAAAAGTCCGTTCATTAAAAAGCCAGAACGATGAGGAGGAAACGGCGATGTTGTCAGGAAGAGATGTGAAAATGTTTACACTTTCAGAGCAGCAGCAGAAGGACTTGGCGAAGAGCCTTGTATCGTTCCTGTCGAGATATAAGCACATATCCGACTCTTACATTATTGAGTTTTTCAGTGAGAACCTGTGGGGAACACTACCTGAAGGATGGCAGAAAGCTTTGAGAGATTTATCACCACCTCAGATAGCAGACCTGCTGCTGGAAAGAGAGACCAAGAACAGAGTctaccCTTGTGTGTGGCCTCTATCTTTACTGGCACTACGGGCCACAGCTCACACACTGGCATTTCCTCGGATGTCTCCAACCTACTGGTCCAAGGACATGGTAAAGGCAGATGAATTTCACTCCAACTGCAGTCAAAGCTCTCTGCTTGATCATATATTCCGCAAACATGTGAAACCCAAGAAACAACATGAGATTCGTAAGCTTGGCATGTTGGTTAAGCAGCTATGTGACCAGACTCAGTGTAGCAGTGTGGTTGATGTTGGGTCTGGGCAGGGCCATTTGACCCGTTTCCTGTCATTTGGGCTTGGTCTGAATGTTACTGCTGTTGAGGCTGATTCCAATCTAGTTTCCATGGCCTCCAAATTTGATGGACAGCTCCTGTCAACCTTGGCCAAAGAGAGTCGGAAGaCAGGCATCGCTCACACAACACCTGATCCTGTACCCCGGCACATAGTTGGCTGGGTCAACCCCAGAGACACCTGGGAGACTTTCCTTCAGCAGCTAGggaagagggagaaaaacagtGAGAGTTACCCAGGCACAGCAGGACCATGTAAAAAGAGACAGCGGGTATCGATGACATCAGGCAAGGAATGTGAGCTTGAAACAGAGCTCGTTTGTGGAAGCCAGCACTTGTGCACAGGGGAATGCAGTTTGGTAGCTTATGCTGATGAGAATCCAGCTAGGTCTGTTCTTCAGCAACATGAAAGGGAAAGCAATGACTGTGTACCTCTGTCAGACACTGTGATGGAAGAACATCCTCTGGGATGGACTTCATCCATACATCCTGAGGTCTGTTCTAGTGTTAAAGAACCAACGTGCTCGGATTTTGTACTGACTGGACTTCATGCTTGCGGTGACCTTAGTGCTACTCTACTCCGCCATTTTGCTCATTGCCCCCATGTTCGAGGAATCACCTCTGTAGCATGCTGCTATATGAAAATCACTACCAAGGAAAACCCTACGCCTCCTGGAGTCATCCTCCCCTCTCTGTCTGATAACACAAATGAAGTATCCCAATCAGAATATGGCTACCCaatgagtgagtgggtgagacAGTTGCCTGGACACGAGCTATCCTATAAGGCCCGTGAGGGAGCATGCCATGCAGTCGAGGACTATCTTCATAGGTTGAGAGATGAGAGCTCATTACTGAAAACGCACTGCTACCGAGCGACCCTGGAGACCATCATCAGAGCAGAGAGGCCTCAGCTACGCAGAGCAGGCATCCAGACCATTAAAAAAGCCCATATGCTACCTTTCACAGAGTATGCCCGTCTGGGGCTCACCCGTGTTGGCTTGCCTGCTgacctgacctttgaccctgtcAGCGTGGAAGGCCTGCTGGAGCAGCAGGGCAGAGTGGTGGTATATTTCAGCTTGGCTCTGCTGCTGGCTCCGGTTGTGGAGACTCTGGTTCTTCTGGACAGAATGCTCTTCCTGCAGGAGAGAGGTTTTCAGAGCCAGCTGATCCCACTGTTTGATCCAGCACTTTCACCCCGAAACCTTGTGCTGGTGGCAATGAAACCCAAAGAAGATGGAGAAGAGGTCATTTAGTAGAACAATTCAAACCAGTCATCTGCATTTTAATGTCCAGAATCCCCAAAATGTCCAAGACTGGATTTGCTTAAAGGGAAAGTTCACTGATGGGACTCAAGTGTGTTTATTAGTGAAATTATGTTGTTtaaatgaagtgctttgaattttaaaacactttttaaaccTGCTGACAAGTATTTTCTGCTAAGTTGTACTGGCATTTTATGGTTTTATCTGCTTTATTGAACAAAATCAGGTCCAGAACTCAGTATAACAGTCAAAATTCTTAATAACAGTacatattttaaacttttttttttttttagcttgggATTAAGATGAAATCTTGTCCAGAAAAGTGAAATCTCCCCGGATGTTTATGCCTGTTGTAAGTTATGTCTAAATTGCATCTGAGAGTGatgttattgattttattttattttgatatagCTTTTTAATACATGTTGGTTTCACTGTGTCTGTCATTTTGTTAGCAATTATCTAAGACAACCTACAAAAGAATAATCCTCTTTGGCCCACAGAGGAAATTGTATAGACCCCAACAGTTCTCTCATAGTTACCAGAGTGAATGTGTTTTACAGGTTGTTTTACATTAATGCCTCTGATTAATTACCAGATTTGATACACAATTAACATACTGGAAGTACTTAAGCCATTATGTgtgtattcagttacattagAACTGCTGACTGGGTGGCCTTTGACTAGTGTGCCCTGTCTGAGACCTAATAGTATTAATGAAGGTATCAGAGCTCAGGATCTGTGGTGCATCTCATAAAACATTTAGAACAGCACAGATATGAACCTACTATAACGTTTTAGGCAGAATCAAAGATAGAAACAGCTTAATTGAAGACATGAAAGATGATATTTAATAAACTGTTGCTAATTCATTGTTCTCA
>XM_034309022.1
CAGTAGCGCACAATATCGGATTGAACCATAGTTTTAGCAACTCCAGCTAGTTGTAGTTGCAGGCATTTGTCTCCAGTGGCTCTTTGACAGTAAACCAGATTCTTGATGAAAAGTCCGTTCATTAAAAAGCCAGAACGATGAGGAGGAAACGGCGATGTTGTCAGGAAGAGATGTGAAAATGTTTACACTTTCAGAGCAGCAGCAGAAGGACTTGGCGAAGAGCCTTGTATCGTTCCTGTCGAGATATAAGCACATATCCGACTCTTACATTATTGAGTTTTTCAGTGAGAACCTGTGGGGAACACTACCTGAAGGATGGCAGAAAGCTTTGAGAGATTTATCACCACCTCAGATAGCAGACCTGCTGCTGGAAAGAGAGACCAAGAACAGAGTctaccCTTGTGTGTGGCCTCTATCTTTACTGGCACTACGGGCCACAGCTCACACACTGGCATTTCCTCGGATGTCTCCAACCTACTGGTCCAAGGACATGGTAAAGGCAGATGAATTTCACTCCAACTGCAGTCAAAGCTCTCTGCTTGATCATATATTCCGCAAACATGTGAAACCCAAGAAACAACATGAGATTCGTAAGCTTGGCATGTTGGTTAAGCAGCTATGTGACCAGACTCAGTGTAGCAGTGTGGTTGATGTTGGGTCTGGGCAGGGCCATTTGACCCGTTTCCTGTCATTTGGGCTTGGTCTGAATGTTACTGCTGTTGAGGCTGATTCCAATCTAGTTTCCATGGCCTCCAAATTTGATGGACAGCTCCTGTCAACCTTGGCCAAAGAGAGTCGGAAGaCAGGCATCGCTCACACAACACCTGATCCTGTACCCCGGCACATAGTTGGCTGGGTCAACCCCAGAGACACCTGGGAGACTTTCCTTCAGCAGCTAGggaagagggagaaaaacagtGAGAGTTACCCAGGCACAGCAGGACCATGTAAAAAGAGACAGCGGGTATCGATGACATCAGGCAAGGAATGTGAGCTTGAAACAGAGCTCGTTTGTGGAAGCCAGCACTTGTGCACAGGGGAATGCAGTTTGGTAGCTTATGCTGATGAGAATCCAGCTAGGTCTGTTCTTCAGCAACATGAAAGGGAAAGCAATGACTGTGTACCTCTGTCAGACACTGTGATGGAAGAACATCCTCTGGGATGGACTTCATCCATACATCCTGAGGTCTGTTCTAGTGTTAAAGAACCAACGTGCTCGGATTTTGTACTGACTGGACTTCATGCTTGCGGTGACCTTAGTGCTACTCTACTCCGCCATTTTGCTCATTGCCCCCATGTTCGAGGAATCACCTCTGTAGCATGCTGCTATATGAAAATCACTACCAAGGAAAACCCTACGCCTCCTGGAGTCATCCTCCCCTCTCTGTCTGATAACACAAATGAAGTATCCCAATCAGAATATGGCTACCCaatgagtgagtgggtgagacAGTTGCCTGGACACGAGCTATCCTATAAGGCCCGTGAGGGAGCATGCCATGCAGTCGAGGACTATCTTCATAGGTTGAGAGATGAGAGCTCATTACTGAAAACGCACTGCTACCGAGCGACCCTGGAGACCATCATCAGAGCAGAGAGGCCTCAGCTACGCAGAGCAGGCATCCAGACCATTAAAAAAGCCCATATGCTACCTTTCACAGAaaagaaagaaagctttttCCGCTCATGAGCCTGGGGGTTACCCTATAACCCTGTATATACTGACATGCCAGCTTCTAGGCAAGTGATCTGTGAAATGACTATATGGAAAATGTCCTTTCACAACCCTCCCCCCCATTGGAGT
>XR_004579128.1
CCAGTAGCGCACAATATCGGATTGAACCATAGTTTTAGCAACTCCAGCTAGTTGTAGTTGCAGGCATTTGTCTCCAGTGGCTCTTTGACAGTAAACCAGATTCTTGATGAAAAGTCCGTTCATTAAAAAGCCAGAACGATGAGGAGGAAACGGCGATGTTGTCAGGAAGAGATGTGAAAATGTTTACACTTTCAGAGCAGCAGCAGAAGGACTTGGCGAAGAGCCTTGTATCGTTCCTGTCGAGATATAAGCACATATCCGACTCTTACATTATTGAGTTTTTCAGTGAGAACCTGTGGGGAACACTACCTGAAGGATGGCAGAAAGCTTTGAGAGATTTATCACCACCTCAGATAGCAGACCTGCTGCTGGAAAGAGAGACCAAGAACAGAGTctaccCTTGTGTGTGGCCTCTATCTTTACTGGCACTACGGGCCACAGCTCACACACTGGCATTTCCTCGGATGTCTCCAACCTACTGGTCCAAGGACATGGTAAAGGCAGATGAATTTCACTCCAACTGCAGTCAAAGCTCTCTGCTTGATCATATATTCCGCAAACATGTGAAACCCAAGAAACAACATGAGATTCGTAAGCTTGGCATGTTGGTTAAGCAGCTATGTGACCAGACTCAGTGTAGCAGTGTGGTTGATGTTGGGTCTGGGCAGGGCCATTTGACCCGTTTCCTGTCATTTGGGCTTGGTCTGAATGTTACTGCTGTTGAGGCTGATTCCAATCTAGTTTCCATGGCCTCCAAATTTGATGGACAGCTCCTGTCAACCTTGGCCAAAGAGAGTCGGAAGaCAGGCATCGCTCACACAACACCTGATCCTGTACCCCGGCACATAGTTGGCTGGGTCAACCCCAGAGACACCTGGGAGACTTTCCTTCAGCAGCTAGggaagagggagaaaaacagtGAGAGTTACCCAGGCACAGCAGGACCATGTAAAAAGAGACAGCGGGTATCGATGACATCAGGCAAGGAATGTGAGCTTGAAACAGAGCTCGTTTGTGGAAGCCAGCACTTGTGCACAGGGGAATGCAGTTTGGTAGCTTATGCTGATGAGAATCCAGCTAGGTCTGTTCTTCAGCAACATGAAAGGGAAAGCAATGACTGTGTACCTCTGTCAGACACTGTGATGGAAGAACATCCTCTGGGATGGACTTCATCCATACATCCTGAGGTCTGTTCTAGTGTTAAAGAACCAACGTGCTCGGATTTTGTACTGACTGGACTTCATGCTTGCGGTGACCTTAGTGCTACTCTACTCCGCCATTTTGCTCATTGCCCCCATGTTCGAGGAATCACCTCTGTAGCATGCTGCTATATGAAAATCACTACCAAGGAAAACCCTACGCCTCCTGGAGTCATCCTCCCCTCTCTGTCTGATAACACAAATGAAGTATCCCAATCAGAATATGGCTACCCaatgagtgagtgggtgagacAGTTGCCTGGACACGAGCTATCCTATAAGGCCCGTGAGGGAGCATGCCATGCAGTCGAGGACTATCTTCATAGGTTGAGAGATGAGAGCTCATTACTGAAAACGCACTGCTACCGAGCGACCCTGGAGACCATCATCAGAGCAGAGAGGCCTCAGCTACGCAGAGCAGGCATCCAGACCATTAAAAAAGCCCATATGCTACCTTTCACAGAtgtagaaagaaagaaagctttttCCGCTCATGAGCCTGGGGGTTACCCTATAACCCTGTATATACTGACATGCCAGCTTCTAGGCAAGTGATCTGTGAAATGACTATATGGAAAATGTCCTTTCACAACCCTCCCCCCCATTGGAGTGACTGCATTTTTCATCTTcagggttggcagGTATGCCCGTCTGGGGCTCACCCGTGTTGGCTTGCCTGCTgacctgacctttgaccctgtcAGCGTGGAAGGCCTGCTGGAGCAGCAGGGCAGAGTGGTGGTATAT

Function

symbol description
rrnad1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human METTL25B (methyltransferase like 25B).

NR:

description
protein RRNAD1-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:0009451 RNA modification biological_process
GO:0032259 methylation biological_process
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926204.2 True 2854 mRNA 0.44 8 18825381 18832201
XM_034309022.1 False 1804 mRNA 0.48 7 18827149 18832203
XR_004579128.1 False 1946 misc_RNA 0.49 8 18826813 18832204

Neighbor

gene id symbol gene type direction distance location
ctsk catk,ctsk,LOC108441922 coding downstream 65154 18756188 ~ 18760227 (-)
LOC113533916 ctss coding downstream 73921 18742043 ~ 18751460 (-)
mcl1b LOC108268142,LOC100304882 coding downstream 131593 18691583 ~ 18693788 (-)
tmod4 tmod4,LOC107663362,LOC107689841 coding downstream 161750 18654139 ~ 18663631 (-)
lysmd1 lysmd1 coding downstream 176519 18645148 ~ 18648862 (-)
hapln2 hapln2 coding upstream 25344 18857548 ~ 18860680 (-)
nes nes coding upstream 152574 18984778 ~ 18991821 (-)
gpatch4 gpatch4 coding upstream 166127 18998331 ~ 19002364 (-)
lmna lmna,LOC107598000,LOC107671682,LOC107704890,LOC107587813 coding upstream 215249 19047453 ~ 19071860 (-)
mc5rb mc5rb,LOC108267943,LOC108410772,LOC107704891,LOC107741731 coding upstream 252978 19085182 ~ 19091614 (-)
G10275 NA non-coding downstream 41934 18783017 ~ 18783447 (-)
G10166 NA non-coding downstream 410973 18413706 ~ 18414408 (-)
G10124 NA non-coding downstream 464351 18360807 ~ 18361030 (-)
G10121 si:dkey-27n14.1,LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760 non-coding downstream 469429 18354911 ~ 18355952 (-)
G10083 NA non-coding downstream 627035 18198127 ~ 18198346 (-)
G10314 NA non-coding upstream 7602 18839806 ~ 18840038 (-)
G10461 NA non-coding upstream 23321 18855525 ~ 18980359 (-)
G10460 NA non-coding upstream 67218 18899422 ~ 18908394 (-)
G10486 NA non-coding upstream 164539 18996743 ~ 18998015 (-)
G10581 NA non-coding upstream 520849 19353053 ~ 19353263 (-)
ensab ensab,LOC108268136,LOC108441925,LOC103045558,LOC107741750,LOC107587831,LOC107663348,LOC107597988,LOC107732479 other downstream 124376 18695036 ~ 18701005 (-)
sema6e sema6c,sema6e,LOC108429044,LOC107587820 other downstream 317858 18383588 ~ 18507523 (-)
G10064 NA other downstream 628620 18188563 ~ 18196761 (-)
G10068 nop2,LOC107685519,LOC107749104,LOC107699935,LOC104957145 other downstream 650815 18172187 ~ 18174566 (-)
gask1a fam198a other downstream 1428408 17377902 ~ 17396973 (-)
ccn4b wisp1,wisp1b,LOC107714595,LOC107724778,LOC107587903,LOC107552812 other upstream 710155 19542359 ~ 19547501 (-)
trnaq-cug_4 NA other upstream 854304 19686508 ~ 19686867 (-)
trnaq-cug_5 NA other upstream 857789 19689993 ~ 19690064 (-)
trnaq-cug_6 NA other upstream 860955 19693159 ~ 19693230 (-)
trnaq-cug_7 NA other upstream 864161 19696365 ~ 19696436 (-)

Expression


Co-expression Network