lmna (lmna,LOC107598000,LOC107671682,LOC107704890,LOC107587813)


Basic Information

Item Value
gene id lmna
gene name lmna,LOC107598000,LOC107671682,LOC107704890,LOC107587813
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19047453 ~ 19071860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926412.2
GTAGTGCTTTTAATGTCCACTAGAGGGCGGAGGAGAGAGTTTGTCACACTCGGTGAGGCGAGCGAGGAGGAATGCTGCAGCTTACACATTCCCAAGCTTTACCACATTTAGGGACGATATTCCCGGAAGGGTTGAAAGGCAGTGAGCCAAGGCCAGAGACAGAGTGAGCAAGGCAGACCAGACACTGTGAAACTCCTCCACTACAGAGAGAAGTAGCAGCTACAGCAAGCTTCCAGAAACTCTCTGATCTCCACAAGAGCTTTGCTCTTCAAGACTTCCCTCTATCAGCTTTACTGCACTAGTCCTCGTAATCTCTTTCAAGGCCAGTGATGGAGAGTCCGGCTCAGAAACGAACCAGCCGTGGTGGGGCGTCCAGCGTGGTCTCACCCACGCGTATTACTCGGCTGCAGGAGAAAGAGGACCTGAGCAACCTGAACGACCGTCTAGCTGTGTACATCGATAAGGTGCGCTCTCTGGAGGTTGAGAATGCCGGCCTGCGACTGCGTATCACGGAGTCGGAGACGGAGATCAGCCGGGAGCTGGGCGGCATGAAGGCAGCGTACGAGAGTGAGCTGGCTGATGCTCGCAAAACTCTCGACTCAGTGGCCAAAGAGAGAGCCAGGTTGCAGCTAGAGCTTAGCAAGATCCGCGAGGACTACAAGGAGCTCAAAGCCAGGAACAGTAAGAAAGAGGCAGATCTGGAGTCAGCTCTGGCCAGGCTAAAGGATCTGGAAGCTCTCCTCAACTCCAAGGATGCTTCTCTCACCACAGCCCTAGGAGAGAAGAGGTCTCTGGAGAGTGAAGTCAGGGATCTGAAGGCTCAGTTGGCTAAGTTGGAAGGCAGTCTGAATGATGCTAAGAAGCAGCTGCAGGATGAGATGCTGAGGAGGGTGGATGCAGAGAACCGCATCCAGACTCTGAAGGAGGAGCTGGAGTTCCAGAAGAACATCTATGCTGAGGAGCTGCGCGAGTCAAAGCGTAGGCATGAGTCGCGTATGGTGGAAATTGACAGTGGTAGACAGCAGGAGTTCGAGAGCAAGCTGGCTGAGGCTCTGGTTGAACTCCGCGGCCAGCATGAAGAGCAGCTTCGCATCTACAAGGAGGAGATTGAGAAGACCTACAATGCCAAGCTGGAGAATGCGCGTCAGTCTGCAGATAGAAACAGTCACCTGGTTGGAGCAGCTCATGAGGAGCTGCAGCAGACGCGTGTGAGGCTGGAGAGCATGTCTGCTCAGCTGTCCCAGCTCCAGAAACAGCTGGCTGCACGGGAGGCTAAGGTGCGTGAGCTGGAGGAGGCTATGTCACGCGAAAGAGATCTCATGCGCCGGCGgctggaggagaaggagaaggaaatgGCGGACATGCGCCACCGCATGCAGCAGCAGCTGGACGAATACCAGGAGCTGCTGGACATCAAGCTGGCCCTGGACATGGAGATCAGTGCTTACCGGAAACTGCTggaaggagaagaggagaggctGCGTCTCTCTCCCAGTCCCCCTCCTGGTCGTGTGATATCAGTCACTCGTACATCAGGCtctggcacacacactcagacccGCTTGGCTCAGAGCAGCAGCACCCGCACTTCGTCTGGCAGTGCTAAGAAAAGGCGCCTCAATGACACAGACAGCGAGGCTTCCAGCGTAACGGGTGGGACAGTGACACGCACTCGCATTTCCCAACAGGCCTCAGCCAGTGGCCGGGTCACTGTGGACGAGGTGGACCTGGAGGGCAAATATGTTCGTCTCAGCAACAAATCTGACCAGGACCAGTCTCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCTCCGGTACTCCCATCATCTACAAGTTCCCACCTAAATTCGCCCTCAAAGCGGGACAGACTGTTACAATCTGGGCTGCAGGAGCTGGTGGGACCCACAATCCTCCCTCTGACCTGGTGTGGAAGAGTCAGAACTCCTGGGGAAGTGGAGATCTCTTCCAGACTACTCTGATTAGCTCCAGTGGAGAGGAGATGGCAATGCGGAAAGTGACACGCACACTGTTCCAGGAAGAAGATGATGAGGAAATGGCTGCTCACAGTACATGTGGCGATGGAGAATATAACCTGCGTAGCCGCACGGTGATCTGTGGCTCATGTGGTCAGCCATCAGACAGGAGTGCTGGCAGCTGTGTGTCGGCCAGCTCTGGAGTCTCCAGCGCCTCTCGCTCTTTCaccagtggaggaggaggacttCCTGAGGGCCTGGTCTCCCACTCCCATTTTATTATGGGCAACGACAATCCCAGACAGGGAGGTCCTAAACCGGAAAAATGCTCCATCATGTAATTCCAGGAACAACCATGAAGTCTACCCAGTTCAGCAAGATCAGTTATTTGTCCAAACTGGAAGacttaatttctttttctaactTGGTcatctatatttttttatttttcatactttATATACTTAATTCTTGTTTTGTACGTAATAATCTGCAGGATAGATGAAATGCTTTTGTCTGGCTGACAAATATTTGCATGCAGCTTGGGTGCTTTATAGggtttgtatatacagtactgtatactaGTCTTTGCATGTGGGCTAGGCAGCTGCTTTCCTATAGAGATGTTCAGGGAGAGAGGTAGGCACATCACTTCACACTTATCCAAAGAACAGGATCCGTCTTCAGCTGTCTTATAAAATGCTGTCACAACACAACACGCACATCTTAGTACTCCTGTCAGCAAGTTTAGTTCCATAGAGTCAGGAGTGTCTTtgaatgtactgtaatgtaaagctattctttgcattttttttcagcttttagcAAATGGTTTCATAATTCAGATATCCTAAGTGTTAAACACTAACTCATGTTAGAAATCAAATTTTGGAATGCAGGAAGCACAGTCTTAATGGGAAGATTAACAGGACCATGTCACTTTATTTAAGAAGCTTTTTTGTGCCTTTACATGAATGCAGTGTTGTAGATTTATGTGTCTCAGTAGCACTGTGTGCCAGTGTTCTTATTCTCTGCCTGTTATGAAAAGGCAATGGGCAGTGTTGGAGTCAGtgacaaatatataataaatgttagtTCCTTTTCTAAGTTGTCACACTAAACATACAACATACGTACTTTATATGAGCTTTTGAGTATTGAATGTCTATGCAATTGTTCGTTGATAGCAATTGTAGATAATACATTTAGGTACAAGGTAGTGAAGAATATAAtacaatttgaaattattttctaaGATGTAATATTCATTGTTTGTAACCTAAGAAGACAGGGAGCACAAGAATGTGTGCAAGTAATACGTACAAGTGACTTTGTGTACATTAGAGAACTGAATTTTGCATTGAAAGCCAAAACATAGATGAAAGCCAAAATATAGGTTAAAGCATAACTAGTCTTGCCCTAGTTAGATATTTGATATCTAAATGAGGACAGTTGAAAATTTTAATTGAACCGAAATGTATAAAAGGTGCTTATGCTTATGGATTGTTTTGTATCCTCAGGCTGGACAGCTGGAAGTGTtgactttgttgttgttgtcattcctctctcttgaagcaGCTATTACTTAAATGACAGGTGTCCACTCCTCCGCCTCTGTGTAGCCCTCACCAGATTTGGTCTTTGGTCATGGAAAACTCCTAACTAGCATGTTAGCTGATGCACATGAAGCTATACGTATTCATGGAGACCTGCATATACAGTGTGCATGATCATTTGGAGAGCTGAATGGGACATGACCCTATTCTAAGATATCCCAGTAACTTCTCTGTATCTCAGAAGGTGGTGGACTGGACACCATTAGCTTGCATAAATAGCGGACGCTTTTCCCTCCTCATATTACTGTGCTCACGTTCTAGTGCTAGAATGCTGGGGGTTTTAGTCAGGCAGTGGAAcatcaccacttttttttttttttttttcatttttacaaatggAATTGAGACCAATTGAAATTACCACTTTTACTgataattgattgattaatgcCTGACTAACaatcattaatgttaatatgGGTTTAAAATATATGGGGTGGGATAtggcaattaaaaaaactttgtgGTAGGAAAAACCTCCCCCATTTCCCCCGTGATGATCTTGAATATATAGTATTCTGTAATGGGCAACAACTGTTTTCCCCCCTTTTCTATTTTGTGGCTTTTTTGAATAATTATTCTTTTCTGCACATAAAAGTGATTACTGATGTAGAATGTGTACGCATAAACAGTGCCTTGAagtctttcattaaaaaaatacaatttcgGA
>XM_034305574.1
AGCGAGGAGGAATGCTGCAGCTTACACATTCCCAAGCTTTACCACATTTAGGGACGATATTCCCATTGCTGTAGGTCACACAAGGATTCACCAGGAAAGAGCCCGCAGCATTGTGTAGTGAAGAATGCAGTGGGCGCACTGGAGGAACAACAGCCCTGCTATAGAACACAGAcgtgtgtgtgctgctgGGAAGGGTTGAAAGGCAGTGAGCCAAGGCCAGAGACAGAGTGAGCAAGGCAGACCAGACACTGTGAAACTCCTCCACTACAGAGAGAAGTAGCAGCTACAGCAAGCTTCCAGAAACTCTCTGATCTCCACAAGAGCTTTGCTCTTCAAGACTTCCCTCTATCAGCTTTACTGCACTAGTCCTCGTAATCTCTTTCAAGGCCAGTGATGGAGAGTCCGGCTCAGAAACGAACCAGCCGTGGTGGGGCGTCCAGCGTGGTCTCACCCACGCGTATTACTCGGCTGCAGGAGAAAGAGGACCTGAGCAACCTGAACGACCGTCTAGCTGTGTACATCGATAAGGTGCGCTCTCTGGAGGTTGAGAATGCCGGCCTGCGACTGCGTATCACGGAGTCGGAGACGGAGATCAGCCGGGAGCTGGGCGGCATGAAGGCAGCGTACGAGAGTGAGCTGGCTGATGCTCGCAAAACTCTCGACTCAGTGGCCAAAGAGAGAGCCAGGTTGCAGCTAGAGCTTAGCAAGATCCGCGAGGACTACAAGGAGCTCAAAGCCAGGAACAGTAAGAAAGAGGCAGATCTGGAGTCAGCTCTGGCCAGGCTAAAGGATCTGGAAGCTCTCCTCAACTCCAAGGATGCTTCTCTCACCACAGCCCTAGGAGAGAAGAGGTCTCTGGAGAGTGAAGTCAGGGATCTGAAGGCTCAGTTGGCTAAGTTGGAAGGCAGTCTGAATGATGCTAAGAAGCAGCTGCAGGATGAGATGCTGAGGAGGGTGGATGCAGAGAACCGCATCCAGACTCTGAAGGAGGAGCTGGAGTTCCAGAAGAACATCTATGCTGAGGAGCTGCGCGAGTCAAAGCGTAGGCATGAGTCGCGTATGGTGGAAATTGACAGTGGTAGACAGCAGGAGTTCGAGAGCAAGCTGGCTGAGGCTCTGGTTGAACTCCGCGGCCAGCATGAAGAGCAGCTTCGCATCTACAAGGAGGAGATTGAGAAGACCTACAATGCCAAGCTGGAGAATGCGCGTCAGTCTGCAGATAGAAACAGTCACCTGGTTGGAGCAGCTCATGAGGAGCTGCAGCAGACGCGTGTGAGGCTGGAGAGCATGTCTGCTCAGCTGTCCCAGCTCCAGAAACAGCTGGCTGCACGGGAGGCTAAGGTGCGTGAGCTGGAGGAGGCTATGTCACGCGAAAGAGATCTCATGCGCCGGCGgctggaggagaaggagaaggaaatgGCGGACATGCGCCACCGCATGCAGCAGCAGCTGGACGAATACCAGGAGCTGCTGGACATCAAGCTGGCCCTGGACATGGAGATCAGTGCTTACCGGAAACTGCTggaaggagaagaggagaggctGCGTCTCTCTCCCAGTCCCCCTCCTGGTCGTGTGATATCAGTCACTCGTACATCAGGCtctggcacacacactcagacccGCTTGGCTCAGAGCAGCAGCACCCGCACTTCGTCTGGCAGTGCTAAGAAAAGGCGCCTCAATGACACAGACAGCGAGGCTTCCAGCGTAACGGGTGGGACAGTGACACGCACTCGCATTTCCCAACAGGCCTCAGCCAGTGGCCGGGTCACTGTGGACGAGGTGGACCTGGAGGGCAAATATGTTCGTCTCAGCAACAAATCTGACCAGGACCAGTCTCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCTCCGGTACTCCCATCATCTACAAGTTCCCACCTAAATTCGCCCTCAAAGCGGGACAGACTGTTACAATCTGGGCTGCAGGAGCTGGTGGGACCCACAATCCTCCCTCTGACCTGGTGTGGAAGAGTCAGAACTCCTGGGGAAGTGGAGATCTCTTCCAGACTACTCTGATTAGCTCCAGTGGAGAGGAGATGGCAATGCGGAAAGTGACACGCACACTGTTCCAGGAAGAAGATGATGAGGAAATGGCTGCTCACAGTACATGTGGCGATGGAGAATATAACCTGCGTAGCCGCACGGTGATCTGTGGCTCATGTGGTCAGCCATCAGACAGGAGTGCTGGCAGCTGTGTGTCGGCCAGCTCTGGAGTCTCCAGCGCCTCTCGCTCTTTCaccagtggaggaggaggacttCCTGAGGGCCTGGTCTCCCACTCCCATTTTATTATGGGCAACGACAATCCCAGACAGGGAGGTCCTAAACCGGAAAAATGCTCCATCATGTAATTCCAGGAACAACCATGAAGTCTACCCAGTTCAGCAAGATCAGTTATTTGTCCAAACTGGAAGacttaatttctttttctaactTGGTcatctatatttttttatttttcatactttATATACTTAATTCTTGTTTTGTACGTAATAATCTGCAGGATAGATGAAATGCTTTTGTCTGGCTGACAAATATTTGCATGCAGCTTGGGTGCTTTATAGggtttgtatatacagtactgtatactaGTCTTTGCATGTGGGCTAGGCAGCTGCTTTCCTATAGAGATGTTCAGGGAGAGAGGTAGGCACATCACTTCACACTTATCCAAAGAACAGGATCCGTCTTCAGCTGTCTTATAAAATGCTGTCACAACACAACACGCACATCTTAGTACTCCTGTCAGCAAGTTTAGTTCCATAGAGTCAGGAGTGTCTTtgaatgtactgtaatgtaaagctattctttgcattttttttcagcttttagcAAATGGTTTCATAATTCAGATATCCTAAGTGTTAAACACTAACTCATGTTAGAAATCAAATTTTGGAATGCAGGAAGCACAGTCTTAATGGGAAGATTAACAGGACCATGTCACTTTATTTAAGAAGCTTTTTTGTGCCTTTACATGAATGCAGTGTTGTAGATTTATGTGTCTCAGTAGCACTGTGTGCCAGTGTTCTTATTCTCTGCCTGTTATGAAAAGGCAATGGGCAGTGTTGGAGTCAGtgacaaatatataataaatgttagtTCCTTTTCTAAGTTGTCACACTAAACATACAACATACGTACTTTATATGAGCTTTTGAGTATTGAATGTCTATGCAATTGTTCGTTGATAGCAATTGTAGATAATACATTTAGGTACAAGGTAGTGAAGAATATAAtacaatttgaaattattttctaaGATGTAATATTCATTGTTTGTAACCTAAGAAGACAGGGAGCACAAGAATGTGTGCAAGTAATACGTACAAGTGACTTTGTGTACATTAGAGAACTGAATTTTGCATTGAAAGCCAAAACATAGATGAAAGCCAAAATATAGGTTAAAGCATAACTAGTCTTGCCCTAGTTAGATATTTGATATCTAAATGAGGACAGTTGAAAATTTTAATTGAACCGAAATGTATAAAAGGTGCTTATGCTTATGGATTGTTTTGTATCCTCAGGCTGGACAGCTGGAAGTGTtgactttgttgttgttgtcattcctctctcttgaagcaGCTATTACTTAAATGACAGGTGTCCACTCCTCCGCCTCTGTGTAGCCCTCACCAGATTTGGTCTTTGGTCATGGAAAACTCCTAACTAGCATGTTAGCTGATGCACATGAAGCTATACGTATTCATGGAGACCTGCATATACAGTGTGCATGATCATTTGGAGAGCTGAATGGGACATGACCCTATTCTAAGATATCCCAGTAACTTCTCTGTATCTCAGAAGGTGGTGGACTGGACACCATTAGCTTGCATAAATAGCGGACGCTTTTCCCTCCTCATATTACTGTGCTCACGTTCTAGTGCTAGAATGCTGGGGGTTTTAGTCAGGCAGTGGAAcatcaccacttttttttttttttttttcatttttacaaatggAATTGAGACCAATTGAAATTACCACTTTTACTgataattgattgattaatgcCTGACTAACaatcattaatgttaatatgGGTTTAAAATATATGGGGTGGGATAtggcaattaaaaaaactttgtgGTAGGAAAAACCTCCCCCATTTCCCCCGTGATGATCTTGAATATATAGTATTCTGTAATGGGCAACAACTGTTTTCCCCCCTTTTCTATTTTGTGGCTTTTTTGAATAATTATTCTTTTCTGCACATAAAAGTGATTACTGATGTAGAATGTGTACGCATAAACAGTGCCTTGAagtctttcattaaaaaaatacaatttcgGA

Function

symbol description
lmna Acts upstream of or within heart contraction and regulation of cell aging. Predicted to be located in intermediate filament. Is expressed in several structures, including fin; head; mesoderm; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Charcot-Marie-Tooth disease type 2B1; intrinsic cardiomyopathy (multiple); lipodystrophy (multiple); muscular dystrophy (multiple); and type 2 diabetes mellitus (multiple). Orthologous to human LMNA (lamin A/C).

NR:

description
PREDICTED: lamin

GO:

id name namespace
GO:0090342 regulation of cell aging biological_process
GO:0060047 heart contraction biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K12641 LMNA; lamin A/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926412.2 False 4260 mRNA 0.47 14 19047453 19071860
XM_034305574.1 True 4324 mRNA 0.47 15 19047453 19071800

Neighbor

gene id symbol gene type direction distance location
gpatch4 gpatch4 coding downstream 45089 18998331 ~ 19002364 (-)
nes nes coding downstream 55632 18984778 ~ 18991821 (-)
hapln2 hapln2 coding downstream 186773 18857548 ~ 18860680 (-)
ctsk catk,ctsk,LOC108441922 coding downstream 287226 18756188 ~ 18760227 (-)
LOC113533916 ctss coding downstream 295993 18742043 ~ 18751460 (-)
mc5rb mc5rb,LOC108267943,LOC108410772,LOC107704891,LOC107741731 coding upstream 13322 19085182 ~ 19091614 (-)
ldlrad4b LOC108267967,LOC108410774 coding upstream 33212 19105072 ~ 19180556 (-)
ptk2ab LOC108267913 coding upstream 110259 19182119 ~ 19249821 (-)
slc45a4b LOC108267890 coding upstream 192268 19264128 ~ 19271498 (-)
gpr20 LOC108263002,LOC108436547,LOC103031715,LOC107741727,LOC107587806,LOC107704849,LOC107723110,LOC105018849 coding upstream 203052 19274912 ~ 19277925 (-)
G10486 NA non-coding downstream 49438 18996743 ~ 18998015 (-)
G10461 NA non-coding downstream 67094 18855525 ~ 18980359 (-)
G10460 NA non-coding downstream 139059 18899422 ~ 18908394 (-)
G10314 NA non-coding downstream 207415 18839806 ~ 18840038 (-)
G10275 NA non-coding downstream 264006 18783017 ~ 18783447 (-)
G10581 NA non-coding upstream 281193 19353053 ~ 19353263 (-)
G10583 NA non-coding upstream 289444 19361304 ~ 19361511 (-)
G10630 NA non-coding upstream 395080 19466940 ~ 19467159 (-)
G10702 NA non-coding upstream 531558 19603418 ~ 19603760 (-)
G10716 NA non-coding upstream 565779 19637639 ~ 19637870 (-)
rrnad1 rrnad1 other downstream 215249 18825381 ~ 18832204 (-)
ensab ensab,LOC108268136,LOC108441925,LOC103045558,LOC107741750,LOC107587831,LOC107663348,LOC107597988,LOC107732479 other downstream 346448 18695036 ~ 18701005 (-)
sema6e sema6c,sema6e,LOC108429044,LOC107587820 other downstream 539930 18383588 ~ 18507523 (-)
G10064 NA other downstream 850692 18188563 ~ 18196761 (-)
G10068 nop2,LOC107685519,LOC107749104,LOC107699935,LOC104957145 other downstream 872887 18172187 ~ 18174566 (-)
ccn4b wisp1,wisp1b,LOC107714595,LOC107724778,LOC107587903,LOC107552812 other upstream 470499 19542359 ~ 19547501 (-)
trnaq-cug_4 NA other upstream 614648 19686508 ~ 19686867 (-)
trnaq-cug_5 NA other upstream 618133 19689993 ~ 19690064 (-)
trnaq-cug_6 NA other upstream 621299 19693159 ~ 19693230 (-)
trnaq-cug_7 NA other upstream 624505 19696365 ~ 19696436 (-)

Expression


Co-expression Network